C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029654 Glrb-001 ENSMUSG00000028020 10090 - 3:80843599-80913660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029654 2.444±1.64 2.712±0.34 0.396±0.08 4.215±0.18 0.294±0.10 0.431±0.04 0.188±0.06 0.058±0.02 0.129±0.03 0.013±0.01 0.923±0.54 0.067±0.05 0.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F1 CIL_0007F1_0002 CGP 3:80684936-80913660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001964 ISS startle response
GO:0005515 IPI protein binding
GO:0005783 ISA endoplasmic reticulum
GO:0006811 ISS ion transport
GO:0007218 ISS neuropeptide signaling pathway
GO:0007268 ISS synaptic transmission
GO:0007340 IMP acrosome reaction
GO:0007399 ISS nervous system development
GO:0007601 IMP visual perception
GO:0007628 IMP adult walking behavior
GO:0008144 IPI drug binding
GO:0009897 ISA external side of plasma membrane
GO:0016020 IDA membrane
GO:0016594 IMP glycine binding
GO:0016933 ISS extracellular-glycine-gated ion channel activity
GO:0016934 IMP extracellular-glycine-gated chloride channel activity
GO:0030054 IEA cell junction
GO:0034220 ISS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0042391 IMP regulation of membrane potential
GO:0045211 IEA postsynaptic membrane
GO:0050905 IMP neuromuscular process
GO:0051291 IEA protein heterooligomerization
GO:0060012 IMP synaptic transmission, glycinergic
GO:0060013 IMP righting reflex
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264428 GLRB-001 protein_coding Homo_sapiens 0 2061
ENST00000506411 GLRB-003 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000509282 GLRB-002 protein_coding Homo_sapiens 0 1842
ENST00000510970 GLRB-006 retained_intron Homo_sapiens 0 462
ENST00000512619 GLRB-005 protein_coding Homo_sapiens 0 544
ENST00000515642 GLRB-004 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000541722 GLRB-201 protein_coding Homo_sapiens 0 1079

Loading