C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEP domain containing 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029825 Depdc1a-003 ENSMUSG00000028175 10090 + 3:159495451-159529576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000029825
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000029825 0.006±0.00 0.127±0.00 0.005±0.00 0.072±0.00 0.448±0.09 0.016±0.00 0.017±0.00 0.045±0.00 0.274±0.15 0.133±0.00 0.038±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0017053 ISS transcriptional repressor complex
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370966 DEPDC1-001 protein_coding Homo_sapiens 0 1024
ENST00000421655 RP11-18B3.2-001 processed_pseudogene Homo_sapiens 0 2261
ENST00000456315 DEPDC1-002 protein_coding Homo_sapiens 0 2610
ENST00000488146 DEPDC1-005 retained_intron Homo_sapiens 0 765
ENST00000489862 DEPDC1-003 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000525124 DEPDC1-004 protein_coding Homo_sapiens 0 460
ENST00000559530 RP11-456J20.1-001 processed_pseudogene Homo_sapiens 0 1452

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