C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor (ligand) superfamily, member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030047 Tnfsf8-001 ENSMUSG00000028362 10090 - 4:63831308-63861347 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030047
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030047 0.064±0.05 0.100±0.08 0.119±0.01 0.016±0.01 1.039±0.40 0.045±0.02 0.026±0.01 0.065±0.03 0.020±0.01 0.148±0.06 0.015±0.01 0.096±0.06 0.035±0.03 0.014±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OV CIL_0004OV_0002 CGP 4:63727084-63861347
CIL_0004OU CIL_0004OU_0002 CGP 4:63831308-64047015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 IEA cytokine activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005615 IEA extracellular space
GO:0006955 IEA immune response
GO:0016021 IEA integral component of membrane
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050830 IMP defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223795 TNFSF8-001 protein_coding Homo_sapiens 0 603
ENST00000618336 TNFSF8-201 protein_coding Homo_sapiens 0 497

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