C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor necrosis factor (ligand) superfamily, member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000223795 TNFSF8-001 ENSG00000106952 9606 - 9:114902844-114930417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000223795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000223795 0.519±0.00 2.046±0.00 0.075±0.00 0.165±0.02 0.824±0.50 0.305±0.19 0.268±0.02 0.172±0.13 0.409±0.27 0.043±0.00 0.439±0.17 1.312±0.14 0.092±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OV CIL_0004OV_0001 CGP 9:114784635-114930595
CIL_0004OU CIL_0004OU_0001 CGP 9:114893343-115118257

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005125 IEA cytokine activity
GO:0005164 IEA tumor necrosis factor receptor binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005887 TAS integral component of plasma membrane
GO:0006915 TAS apoptotic process
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0008283 TAS cell proliferation
GO:0016020 IEA membrane
GO:0043374 IEA CD8-positive, alpha-beta T cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050830 IEA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030047 Tnfsf8-001 protein_coding Mus_musculus 0 603

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