Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	lysine (K)-specific demethylase 4C
ENST00000381309	KDM4C-001	ENSG00000107077	9606	+	9:6757656-7175648	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000381309	1.339±0.00	2.699±0.00	1.327±0.12	2.559±0.95	2.425±0.25	0.908±0.37	2.318±0.82	1.088±0.05	3.073±0.12	0.393±0.00	2.745±1.40	1.666±0.28	2.577±1.24

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0001D7	CIL_0001D7_0001	CGP	9:6757641-7888380

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000790	IDA	nuclear chromatin
GO:0005515	IEA	protein binding
GO:0006351	IEA	transcription, DNA-templated
GO:0006357	IDA	regulation of transcription from RNA polymerase II promoter
GO:0008270	IEA	zinc ion binding
GO:0008284	IMP	positive regulation of cell proliferation
GO:0019899	IPI	enzyme binding
GO:0032454	IMP	histone demethylase activity (H3-K9 specific)
GO:0033169	IMP	histone H3-K9 demethylation
GO:0046417	IEA	chorismate metabolic process
GO:0050681	IPI	androgen receptor binding
GO:0051213	IEA	dioxygenase activity
GO:0055114	IEA	oxidation-reduction process

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000030102	Kdm4c-001	protein_coding	Mus_musculus	0	1821
ENSMUST00000077851	Kdm4c-006	protein_coding	Mus_musculus	0	1821
ENSMUST00000156065	Kdm4c-004	processed_transcript	Mus_musculus	0	1447
ENSDART00000024302	kdm4ab-201	protein_coding	Danio_rerio	0	442
ENSMUST00000150439	Kdm4c-002	processed_transcript	Mus_musculus	0	278
ENSMUST00000148753	Kdm4c-003	processed_transcript	Mus_musculus	0	204
ENSMUST00000149295	Kdm4c-005	protein_coding	Mus_musculus	0	198

Loading