C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 38B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030127 Tmem38b-001 ENSMUSG00000028420 10090 + 4:53826045-53862019 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030127 5.820±1.27 2.348±0.30 9.893±2.58 1.455±0.46 2.632±0.37 3.170±0.82 3.567±0.67 5.805±1.19 6.663±3.82 5.215±0.75 17.941±1.38 2.065±0.69 7.451±3.91 5.123±1.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064K CIL_00064K_0002 CGP 4:53779705-53862019
CIL_0001JX CIL_0001JX_0002 CGP 4:53826045-55083563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005267 IEA potassium channel activity
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263593 SIAE-001 protein_coding Homo_sapiens 3e-25 122
ENST00000374688 TMEM38B-002 protein_coding Homo_sapiens 0 608
ENST00000374692 TMEM38B-001 protein_coding Homo_sapiens 0 721
ENST00000434214 TMEM38B-005 protein_coding Homo_sapiens 5e-28 128
ENST00000435034 TMEM38B-003 protein_coding Homo_sapiens 0 503
ENST00000451560 TMEM38B-004 protein_coding Homo_sapiens 0 230
ENST00000477627 FAM73A-003 protein_coding Homo_sapiens 5e-18 95
ENST00000545756 SIAE-201 protein_coding Homo_sapiens 1e-25 122

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