C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 38B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374692 TMEM38B-001 ENSG00000095209 9606 + 9:105694544-105776612 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374692
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374692 0.359±0.00 1.006±0.00 1.284±0.00 0.570±0.07 0.932±0.31 2.674±0.00 1.326±0.08 0.879±0.54 0.846±0.00 1.332±0.00 2.107±0.95 0.846±0.24 6.761±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064K CIL_00064K_0001 CGP 9:105662457-105776612
CIL_0001JX CIL_0001JX_0001 CGP 9:105694544-107013634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005261 IEA cation channel activity
GO:0005267 TAS potassium channel activity
GO:0005634 IDA nucleus
GO:0015672 IEA monovalent inorganic cation transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031965 NAS nuclear membrane
GO:0033017 NAS sarcoplasmic reticulum membrane
GO:0071805 IEA potassium ion transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030127 Tmem38b-001 protein_coding Mus_musculus 0 721
ENSMUST00000144167 Tmem38b-003 protein_coding Mus_musculus 0 464
ENSMUST00000151206 Tmem38b-004 processed_transcript Mus_musculus 0 272
ENSMUST00000150803 Tmem38b-002 processed_transcript Mus_musculus 4e-27 128

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