C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030263 St3gal3-001 ENSMUSG00000028538 10090 - 4:117932154-118134890 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030263 5.939±2.21 16.762±0.95 5.179±0.05 7.850±2.75 7.644±1.47 20.090±4.59 12.473±2.37 7.053±1.97 6.428±5.15 4.189±1.98 19.382±1.53 9.522±3.42 2.544±0.89 0.703±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_0002F2 CIL_0002F2_0002 CGP 4:117932154-118180043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003836 IDA beta-galactoside (CMP) alpha-2,3-sialyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006486 IDA:IEA protein glycosylation
GO:0008118 IEA N-acetyllactosaminide alpha-2,3-sialyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0030173 IEA integral component of Golgi membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262915 ST3GAL3-201 protein_coding Homo_sapiens 0 1685
ENST00000330208 ST3GAL3-202 protein_coding Homo_sapiens 0 516
ENST00000332628 ST3GAL3-033 protein_coding Homo_sapiens 0 1166
ENST00000335430 ST3GAL3-203 protein_coding Homo_sapiens 0 743
ENST00000347631 ST3GAL3-006 protein_coding Homo_sapiens 0 1406
ENST00000351035 ST3GAL3-204 protein_coding Homo_sapiens 0 1685
ENST00000353126 ST3GAL3-205 protein_coding Homo_sapiens 0 1088
ENST00000361392 ST3GAL3-001 protein_coding Homo_sapiens 0 2019
ENST00000361400 ST3GAL3-002 protein_coding Homo_sapiens 0 1748
ENST00000361746 ST3GAL3-004 protein_coding Homo_sapiens 0 1282
ENST00000361812 ST3GAL3-007 protein_coding Homo_sapiens 0 399
ENST00000372362 ST3GAL3-012 protein_coding Homo_sapiens 0 575
ENST00000372365 ST3GAL3-009 protein_coding Homo_sapiens 0 817
ENST00000372366 ST3GAL3-008 protein_coding Homo_sapiens 0 710
ENST00000372367 ST3GAL3-005 protein_coding Homo_sapiens 0 710
ENST00000372368 ST3GAL3-010 protein_coding Homo_sapiens 0 1282
ENST00000372369 ST3GAL3-003 protein_coding Homo_sapiens 0 1055
ENST00000372372 ST3GAL3-011 protein_coding Homo_sapiens 0 1282
ENST00000372374 ST3GAL3-206 protein_coding Homo_sapiens 0 1568
ENST00000461066 ST3GAL3-035 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000461375 ST3GAL3-022 processed_transcript Homo_sapiens 0 874
ENST00000469715 ST3GAL3-018 nonsense_mediated_decay Homo_sapiens 0 817
ENST00000479383 ST3GAL3-020 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000484868 ST3GAL3-019 processed_transcript Homo_sapiens 0 211
ENST00000489897 ST3GAL3-016 nonsense_mediated_decay Homo_sapiens 0 451
ENST00000490502 ST3GAL3-024 protein_coding Homo_sapiens 0 593
ENST00000490541 ST3GAL3-013 nonsense_mediated_decay Homo_sapiens 0 771
ENST00000495482 ST3GAL3-023 retained_intron Homo_sapiens 0 636
ENST00000528371 ST3GAL3-025 protein_coding Homo_sapiens 0 580
ENST00000530154 ST3GAL3-032 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000530581 ST3GAL3-031 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000531451 ST3GAL3-017 protein_coding Homo_sapiens 0 339
ENST00000531816 ST3GAL3-034 protein_coding Homo_sapiens 2.99878e-43 178
ENST00000531993 ST3GAL3-026 protein_coding Homo_sapiens 0 819
ENST00000532911 ST3GAL3-021 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000533212 ST3GAL3-030 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000533933 ST3GAL3-027 protein_coding Homo_sapiens 0 1055
ENST00000533997 ST3GAL3-028 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000545417 ST3GAL3-207 protein_coding Homo_sapiens 0 518

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