C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic-like 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030588 Phc2-201 ENSMUSG00000028796 10090 + 4:128654702-128752881 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryTestisENSMUST00000030588
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary Testis
ENSMUST00000030588 4.046±0.24 6.329±1.75 8.885±0.00 3.064±0.23 2.322±0.00 1.136±0.17 3.719±0.00 6.001±1.08 1.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F1 CIL_0008F1_0002 VISTA 4:128414851-129016970
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000792 IDA heterochromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007275 IEA multicellular organismal development
GO:0007283 IGI spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IEA PRC1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257118 PHC2-001 protein_coding Homo_sapiens 0 3373
ENST00000373418 PHC2-003 protein_coding Homo_sapiens 0 2076
ENST00000373422 PHC2-002 protein_coding Homo_sapiens 0 2414
ENST00000431992 PHC2-201 protein_coding Homo_sapiens 0 2632
ENST00000467894 PHC2-006 processed_transcript Homo_sapiens 0 944
ENST00000468406 PHC2-010 processed_transcript Homo_sapiens 0 728
ENST00000473158 PHC2-008 processed_transcript Homo_sapiens 0 728
ENST00000484692 PHC2-011 processed_transcript Homo_sapiens 0 464
ENST00000485928 PHC2-004 processed_transcript Homo_sapiens 0 883
ENST00000486897 PHC2-005 processed_transcript Homo_sapiens 0 556
ENST00000493483 PHC2-007 processed_transcript Homo_sapiens 0 556

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