C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257118 PHC2-001 ENSG00000134686 9606 - 1:33323626-33375593 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000257118
Transcript ID Brain Testis
ENST00000257118 0.657±0.00 7.931±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0001 VISTA 1:32956893-33558359
CIL_0008F1 CIL_0008F1_0001 VISTA 1:33063188-33665346

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000792 IEA heterochromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030588 Phc2-201 protein_coding Mus_musculus 0 3373
ENSMUST00000106080 Phc2-001 protein_coding Mus_musculus 0 3373
ENSMUST00000106079 Phc2-004 protein_coding Mus_musculus 0 2076
ENSMUST00000143632 Phc2-005 nonsense_mediated_decay Mus_musculus 0 1555
ENSMUST00000147572 Phc2-008 protein_coding Mus_musculus 0 1000
ENSMUST00000136377 Phc2-002 protein_coding Mus_musculus 0 929
ENSMUST00000134421 Phc2-009 protein_coding Mus_musculus 0 800
ENSMUST00000138445 Phc2-010 nonsense_mediated_decay Mus_musculus 0 800
ENSMUST00000155653 Phc2-006 retained_intron Mus_musculus 0 542
ENSMUST00000133439 Phc2-007 protein_coding Mus_musculus 0 390
ENSMUST00000120946 Phc2-011 protein_coding Mus_musculus 0 220
ENSMUST00000148723 Phc2-003 retained_intron Mus_musculus 3.99931e-42 178

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