C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 50A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030626 Tmem50a-001 ENSMUSG00000028822 10090 - 4:134897849-134915024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030626 58.593±10.62 63.532±4.40 71.653±6.23 28.493±5.05 43.530±12.15 23.740±3.83 33.377±3.82 46.060±9.09 46.854±7.79 67.025±3.52 20.054±0.88 33.987±10.56 24.382±9.28 5.923±2.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WX CIL_0001WX_0002 CGP 4:134864536-134915024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374358 TMEM50A-001 protein_coding Homo_sapiens 0 575
ENST00000468704 TMEM50A-005 processed_transcript Homo_sapiens 0 442
ENST00000480937 TMEM50A-004 processed_transcript Homo_sapiens 0 209
ENST00000491936 TMEM50A-003 processed_transcript Homo_sapiens 0 366
ENST00000498135 TMEM50A-002 processed_transcript Homo_sapiens 0 366

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