C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA selenocysteine 1 associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030730 Trnau1ap-001 ENSMUSG00000028898 10090 - 4:132311763-132329538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030730
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030730 3.970±1.27 3.081±0.89 2.970±0.77 3.637±0.85 2.702±1.12 3.256±1.23 3.588±0.72 6.042±1.47 3.074±1.11 2.211±0.37 4.383±0.64 6.102±2.61 6.687±2.81 1.928±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001514 IDA selenocysteine incorporation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373830 TRNAU1AP-001 protein_coding Homo_sapiens 0 1258
ENST00000411406 TRNAU1AP-006 processed_transcript Homo_sapiens 0 217
ENST00000464093 TRNAU1AP-005 processed_transcript Homo_sapiens 0 268
ENST00000464880 TRNAU1AP-007 processed_transcript Homo_sapiens 0 364
ENST00000480930 TRNAU1AP-002 processed_transcript Homo_sapiens 0 891
ENST00000484775 TRNAU1AP-010 processed_transcript Homo_sapiens 0 874
ENST00000491577 TRNAU1AP-004 processed_transcript Homo_sapiens 0 891
ENST00000495215 TRNAU1AP-008 processed_transcript Homo_sapiens 0 630
ENST00000495995 TRNAU1AP-003 processed_transcript Homo_sapiens 0 322
ENST00000497790 TRNAU1AP-009 processed_transcript Homo_sapiens 0 324

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