C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000054666 VAMP3-001 ENSG00000049245 9606 + 1:7771269-7781432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000054666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000054666 50.897±0.00 32.140±0.00 5.790±0.00 27.290±18.13 30.160±19.89 19.017±6.08 13.105±9.50 19.338±10.38 9.093±0.71 26.542±8.96 12.169±8.92 34.082±11.15 48.170±4.70 27.286±1.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019N CIL_00019N_0002 CGP 1:6785324-7781432
CIL_0007VW CIL_0007VW_0001 VISTA 1:7770379-8371827
CIL_00019M CIL_00019M_0002 CGP 1:7771269-7845177

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0001921 ISS positive regulation of receptor recycling
GO:0005515 IPI protein binding
GO:0005886 ISS plasma membrane
GO:0006461 TAS protein complex assembly
GO:0006887 TAS exocytosis
GO:0006904 TAS vesicle docking involved in exocytosis
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0016192 ISS:IEA vesicle-mediated transport
GO:0016324 IEA apical plasma membrane
GO:0017075 IEA syntaxin-1 binding
GO:0017156 IEA calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0030136 IDA clathrin-coated vesicle
GO:0030141 IEA secretory granule
GO:0030665 IEA clathrin-coated vesicle membrane
GO:0031201 IEA SNARE complex
GO:0031410 IEA cytoplasmic vesicle
GO:0034446 ISS substrate adhesion-dependent cell spreading
GO:0035493 IEA SNARE complex assembly
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0043001 IEA Golgi to plasma membrane protein transport
GO:0043005 IEA neuron projection
GO:0043229 IEA intracellular organelle
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045202 IEA synapse
GO:0055037 IDA recycling endosome
GO:0061025 TAS membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030797 Vamp3-001 protein_coding Mus_musculus 0 568
ENSMUST00000155446 Vamp3-002 retained_intron Mus_musculus 0 259
ENSMUST00000125205 Vamp3-003 retained_intron Mus_musculus 1e-19 102

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