C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apoptosis-inducing, TAF9-like domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030813 Apitd1-001 ENSMUSG00000073705 10090 - 4:149128198-149137629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030813
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030813 0.887±0.36 0.162±0.03 1.294±0.41 5.066±1.44 0.516±0.18 0.452±0.27 0.400±0.21 0.298±0.17 5.725±4.18 0.493±0.11 0.329±0.16 2.124±0.85 4.124±2.45 3.120±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219
CIL_0007WE CIL_0007WE_0002 VISTA 4:148621504-149222572
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000712 ISS resolution of meiotic recombination intermediates
GO:0000776 IEA kinetochore
GO:0003677 ISS DNA binding
GO:0003682 ISS chromatin binding
GO:0003690 ISS double-stranded DNA binding
GO:0005515 IEA protein binding
GO:0006281 ISS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007067 IEA mitotic nuclear division
GO:0031297 ISS replication fork processing
GO:0043240 ISS Fanconi anaemia nuclear complex
GO:0046982 IEA protein heterodimerization activity
GO:0071821 ISS FANCM-MHF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309048 APITD1-001 protein_coding Homo_sapiens 0 329
ENST00000400900 APITD1-CORT-001 protein_coding Homo_sapiens 0 263
ENST00000470413 APITD1-CORT-002 protein_coding Homo_sapiens 0 193
ENST00000477755 APITD1-002 protein_coding Homo_sapiens 0 287
ENST00000602296 APITD1-CORT-201 protein_coding Homo_sapiens 1e-28 132
ENST00000602787 APITD1-CORT-202 protein_coding Homo_sapiens 0 329

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