C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apoptosis-inducing, TAF9-like domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309048 APITD1-001 ENSG00000175279 9606 + 1:10430443-10442809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000309048
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000309048 0.842±0.00 1.119±0.00 1.601±1.03 1.041±0.00 0.735±0.20 0.867±0.00 1.306±0.89 1.011±0.49 0.302±0.00 5.024±3.73 2.619±1.40 40.069±20.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IM CIL_0008IM_0001 VISTA 1:10233066-10834152
CIL_0007WE CIL_0007WE_0001 VISTA 1:10372013-10973061
CIL_00085P CIL_00085P_0001 VISTA 1:10397607-10998574
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000712 IMP resolution of meiotic recombination intermediates
GO:0000776 IEA kinetochore
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003690 IDA double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006281 IDA DNA repair
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007067 IEA mitotic nuclear division
GO:0031297 IMP replication fork processing
GO:0031398 TAS positive regulation of protein ubiquitination
GO:0043240 IDA Fanconi anaemia nuclear complex
GO:0046982 IEA protein heterodimerization activity
GO:0071821 IDA FANCM-MHF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030813 Apitd1-001 protein_coding Mus_musculus 0 329
ENSMUST00000176124 Apitd1-006 protein_coding Mus_musculus 0 296
ENSMUST00000177408 Apitd1-007 protein_coding Mus_musculus 0 241
ENSMUST00000150150 Apitd1-002 protein_coding Mus_musculus 0 200
ENSMUST00000105696 Apitd1-005 nonsense_mediated_decay Mus_musculus 0 196
ENSMUST00000105695 Apitd1-003 protein_coding Mus_musculus 0 193

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