C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030868 Sema3d-201 ENSMUSG00000040254 10090 + 5:12383166-12588943 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030868 0.814±0.14 0.485±0.13 2.784±0.21 0.324±0.08 1.287±0.17 0.307±0.10 0.717±0.10 1.066±0.11 0.390±0.16 1.524±0.30 0.094±0.02 9.657±6.78 0.062±0.07 0.029±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PY CIL_0008PY_0002 VISTA 5:12205539-12809076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005576 IEA extracellular region
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053125 sema3e-001 protein_coding Danio_rerio 0.0000000003 73
ENST00000284136 SEMA3D-001 protein_coding Homo_sapiens 0 3027
ENST00000444867 SEMA3D-002 protein_coding Homo_sapiens 0 1002
ENST00000463315 SEMA3D-003 retained_intron Homo_sapiens 1.00053e-42 178
ENST00000484038 SEMA3D-004 processed_transcript Homo_sapiens 0 1836

Loading