C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA fragmentation factor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030893 Dffb-001 ENSMUSG00000029027 10090 - 4:153964449-153975126 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030893
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030893 2.405±0.89 1.428±0.57 2.635±0.35 4.927±0.83 4.158±0.81 3.870±0.35 1.535±0.73 1.944±0.55 3.798±2.56 3.173±0.36 0.771±0.04 2.850±1.39 1.612±0.74 1.173±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IBA nuclear chromatin
GO:0003677 IDA DNA binding
GO:0004518 IDA nuclease activity
GO:0004536 IBA deoxyribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 ISO nucleus
GO:0006309 IBA apoptotic DNA fragmentation
GO:0007420 IEA brain development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239032 PRLHR-001 protein_coding Homo_sapiens 0.0001 55
ENST00000276431 TNFRSF10B-001 protein_coding Homo_sapiens 0.00008 55
ENST00000286063 PDE11A-001 protein_coding Homo_sapiens 0.000000002 71
ENST00000329281 BLZF1-002 protein_coding Homo_sapiens 0.000000005 68
ENST00000340965 PAQR5-201 protein_coding Homo_sapiens 0.00009 55
ENST00000369851 GNAI3-001 protein_coding Homo_sapiens 0.00004 58
ENST00000395407 PAQR5-001 protein_coding Homo_sapiens 0.0001 55
ENST00000523752 TNFRSF10B-004 retained_intron Homo_sapiens 0.00006 55

Loading