C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382103 SEPSECS-001 ENSG00000109618 9606 - 4:25120014-25160442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382103
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382103 1.058±0.00 0.612±0.00 0.442±0.03 0.530±0.04 0.180±0.01 1.876±1.00 1.270±0.64 0.337±0.19 0.103±0.00 0.909±0.16 0.711±0.03 1.153±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TJ CIL_0003TJ_0002 CGP 4:24998847-25160442
CIL_0002OX CIL_0002OX_0001 CGP 4:25120014-25279092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0001514 ISS selenocysteine incorporation
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0016740 IEA transferase activity
GO:0016785 IEA transferase activity, transferring selenium-containing groups
GO:0030170 IEA pyridoxal phosphate binding
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031069 Sepsecs-001 protein_coding Mus_musculus 0 1683
ENSMUST00000150709 Sepsecs-002 nonsense_mediated_decay Mus_musculus 0 1352
ENSMUST00000126574 Sepsecs-004 nonsense_mediated_decay Mus_musculus 0 527
ENSMUST00000123856 Sepsecs-003 nonsense_mediated_decay Mus_musculus 0 364

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