C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031104 Pds5a-201 ENSMUSG00000029202 10090 - 5:65615260-65697856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000031104
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000031104 4.513±2.02 2.896±0.51 3.437±1.67 4.625±1.46 4.920±1.48 3.127±1.28 3.922±0.43 2.678±1.37 5.945±0.22 6.193±2.52 9.345±5.78 0.602±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TZ CIL_0002TZ_0003 CGP 5:65537233-65697856
CIL_0002TY CIL_0002TY_0003 CGP 5:65615260-65830108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0007064 IEA mitotic sister chromatid cohesion
GO:0008156 IEA negative regulation of DNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303538 PDS5A-001 protein_coding Homo_sapiens 0 5662
ENST00000503396 PDS5A-003 protein_coding Homo_sapiens 0 2699
ENST00000503696 PDS5A-011 retained_intron Homo_sapiens 0 351
ENST00000503867 PDS5A-008 retained_intron Homo_sapiens 0 438
ENST00000506262 PDS5A-005 retained_intron Homo_sapiens 0 326
ENST00000507020 PDS5A-009 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000507766 PDS5A-004 retained_intron Homo_sapiens 0 797
ENST00000512643 PDS5A-007 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000513798 PDS5A-006 protein_coding Homo_sapiens 0 523

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