C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031121 Gabra4-201 ENSMUSG00000029211 10090 - 5:71569734-71658308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031121
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031121 0.171±0.15 0.049±0.03 0.122±0.03 5.060±4.30 0.035±0.01 0.118±0.04 0.023±0.01 0.109±0.03 0.007±0.00 0.372±0.12 0.025±0.02 0.074±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YV CIL_0002YV_0002 CGP 5:71442824-71658308
CIL_0001N0 CIL_0001N0_0002 CGP 5:71569734-72138389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007417 IMP central nervous system development
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport
GO:2001023 IMP regulation of response to drug

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264318 GABRA4-001 protein_coding Homo_sapiens 0 2481
ENST00000502874 GABRA4-005 nonsense_mediated_decay Homo_sapiens 0 917
ENST00000508560 GABRA4-004 nonsense_mediated_decay Homo_sapiens 0 1869
ENST00000509316 GABRA4-002 processed_transcript Homo_sapiens 0 468
ENST00000511523 GABRA4-003 nonsense_mediated_decay Homo_sapiens 0 893

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