C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, alpha 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264318 GABRA4-001 ENSG00000109158 9606 - 4:46918900-46994407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000264318
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000264318 2.563±0.37 0.007±0.00 0.016±0.00 0.853±0.22 0.042±0.00 0.009±0.01 0.004±0.00 0.002±0.00 0.067±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002YV CIL_0002YV_0001 CGP 4:46734827-46994407
CIL_0001N0 CIL_0001N0_0001 CGP 4:46918900-47426444

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007214 IEA gamma-aminobutyric acid signaling pathway
GO:0007268 TAS synaptic transmission
GO:0007417 IEA central nervous system development
GO:0008503 TAS benzodiazepine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport
GO:2001023 IEA regulation of response to drug

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031121 Gabra4-201 protein_coding Mus_musculus 0 2481
ENSDART00000104135 gabra5-201 protein_coding Danio_rerio 0 248
ENSDART00000138026 gabra5-001 protein_coding Danio_rerio 0 248
ENSDART00000144106 gabra5-002 processed_transcript Danio_rerio 0 204

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