C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314595 POLR2B-201 ENSG00000047315 9606 + 4:56978943-57031168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyOvaryPlacentaTestisENST00000314595
Transcript ID Heart Kidney Ovary Placenta Testis
ENST00000314595 5.093±0.00 7.374±0.00 14.122±1.99 11.731±1.19 7.975±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0003EC CIL_0003EC_0002 CGP 4:56907876-56978823
CIL_0003E8 CIL_0003E8_0002 CGP 4:56963370-57031168
CIL_0001WP CIL_0001WP_0001 CGP 4:56977722-57110385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0032549 IEA ribonucleoside binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031167 Polr2b-001 protein_coding Mus_musculus 0 4647
ENSMUST00000132134 Polr2b-003 retained_intron Mus_musculus 0 475
ENSMUST00000150191 Polr2b-004 retained_intron Mus_musculus 0 425
ENSMUST00000046746 Igfbp7-201 protein_coding Mus_musculus 0.0000000002 73
ENSMUST00000163898 Igfbp7-202 protein_coding Mus_musculus 0.0000000002 73

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