C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centromere protein C1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031170 Cenpc1-201 ENSMUSG00000029253 10090 - 5:86012043-86065583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031170
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031170 1.661±0.97 4.181±2.04 3.719±0.71 4.320±2.47 0.808±0.75 1.778±0.74 0.403±0.02 0.638±0.32 2.406±2.16 0.804±0.22 0.824±0.19 3.379±1.09 4.178±1.32 4.072±1.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000M8 CIL_0000M8_0002 CGP 5:84057791-86065583
CIL_0000M7 CIL_0000M7_0002 CGP 5:86012043-86103993

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 ISS mitotic cell cycle
GO:0000776 ISS kinetochore
GO:0000780 IEA condensed nuclear chromosome, centromeric region
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005721 ISS pericentric heterochromatin
GO:0005737 IEA cytoplasm
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0019237 IEA centromeric DNA binding
GO:0051382 ISS kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273853 CENPC-001 protein_coding Homo_sapiens 0 468
ENST00000506882 CENPC-003 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000513216 CENPC-006 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000515140 CENPC-005 nonsense_mediated_decay Homo_sapiens 0 289

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