C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIH, polypeptide 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031333 Gtf2h3-001 ENSMUSG00000029387 10090 + 5:124579140-124597680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031333
Transcript ID Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031333 2.733±0.45 2.393±1.31 1.738±0.00 3.223±1.64 1.661±0.00 1.543±0.32 2.718±0.90 4.507±1.04 0.637±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006O CIL_00006O_0003 CGP 5:124570213-124597680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0004672 ISS protein kinase activity
GO:0005675 ISS holo TFIIH complex
GO:0006200 IEA ATP catabolic process
GO:0006289 IEA nucleotide-excision repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0008094 ISS DNA-dependent ATPase activity
GO:0008353 ISS RNA polymerase II carboxy-terminal domain kinase activity
GO:0046872 IEA metal ion binding
GO:0047485 IEA protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228955 GTF2H3-002 protein_coding Homo_sapiens 0 822
ENST00000536375 GTF2H3-011 protein_coding Homo_sapiens 0 464
ENST00000537368 GTF2H3-009 retained_intron Homo_sapiens 0 387
ENST00000537695 GTF2H3-010 retained_intron Homo_sapiens 0 479
ENST00000538533 GTF2H3-013 protein_coding Homo_sapiens 0 457
ENST00000538845 GTF2H3-003 protein_coding Homo_sapiens 0 449
ENST00000539429 GTF2H3-014 retained_intron Homo_sapiens 0 361
ENST00000539994 GTF2H3-004 protein_coding Homo_sapiens 0 512
ENST00000542279 GTF2H3-007 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000543005 GTF2H3-006 retained_intron Homo_sapiens 0 222
ENST00000543154 GTF2H3-008 protein_coding Homo_sapiens 0 359
ENST00000543341 GTF2H3-001 protein_coding Homo_sapiens 0 931
ENST00000543415 GTF2H3-012 nonsense_mediated_decay Homo_sapiens 0 734
ENST00000618160 GTF2H3-201 protein_coding Homo_sapiens 0 606

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