C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000091402-ENSDARG00000067560 CGP 7955 5:72581787-72601482
GeneTranscriptPositionBiotype
ENSDARG00000067560 (gtf2h3)
general transcription factor IIH, polypeptide 3 		ENSDART00000097244 (gtf2h3-001) 72590723-72601482 protein_coding
ENSDART00000148734 (gtf2h3-002) 72590752-72596667 retained_intron
ENSDARG00000091402 (eif2b1)
eukaryotic translation initiation factor 2B, subunit 1 alpha 		ENSDART00000011192 (eif2b1-202) 72581787-72589323 protein_coding
CIL_00006O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111361-ENSG00000111358 CGP 9606 12:123620406-123662606
GeneTranscriptPositionBiotype
ENSG00000111358 (GTF2H3)
general transcription factor IIH, polypeptide 3, 34kDa 		ENST00000228955 (GTF2H3-002) 123633829-123660829 protein_coding
ENST00000536375 (GTF2H3-011) 123633845-123660212 protein_coding
ENST00000537368 (GTF2H3-009) 123633829-123651156 retained_intron
ENST00000537695 (GTF2H3-010) 123633833-123654970 retained_intron
ENST00000538533 (GTF2H3-013) 123639264-123659830 protein_coding
ENST00000538845 (GTF2H3-003) 123633829-123655796 protein_coding
ENST00000539429 (GTF2H3-014) 123659363-123660628 retained_intron
ENST00000539994 (GTF2H3-004) 123633829-123654998 protein_coding
ENST00000542279 (GTF2H3-007) 123633828-123659584 nonsense_mediated_decay
ENST00000543005 (GTF2H3-006) 123633829-123648396 retained_intron
ENST00000543154 (GTF2H3-008) 123648051-123660232 protein_coding
ENST00000543341 (GTF2H3-001) 123633829-123662606 protein_coding
ENST00000543415 (GTF2H3-012) 123639263-123660250 nonsense_mediated_decay
ENST00000618160 (GTF2H3-201) 123633739-123662603 protein_coding
ENSG00000111361 (EIF2B1)
eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa 		ENST00000424014 (EIF2B1-001) 123620406-123633766 protein_coding
ENST00000452159 (EIF2B1-005) 123630047-123633688 retained_intron
ENST00000534960 (EIF2B1-007) 123622636-123633604 protein_coding
ENST00000537073 (EIF2B1-002) 123625967-123633766 protein_coding
ENST00000539951 (EIF2B1-004) 123621738-123632447 protein_coding
ENST00000543940 (EIF2B1-006) 123630234-123633657 processed_transcript
ENSG00000111364 (DDX55)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 		ENST00000238146 (DDX55-001) 123602099-123620941 protein_coding
ENST00000354291 (DDX55-012) 123602130-123616603 nonsense_mediated_decay
ENST00000421670 (DDX55-014) 123618016-123620422 protein_coding
ENST00000536079 (DDX55-010) 123602143-123610070 retained_intron
ENST00000538744 (DDX55-004) 123602128-123620144 protein_coding
ENST00000539934 (DDX55-002) 123604873-123618153 retained_intron
ENST00000540763 (DDX55-008) 123602128-123610103 nonsense_mediated_decay
ENST00000541259 (DDX55-015) 123613215-123619628 processed_transcript
ENST00000542286 (DDX55-003) 123602077-123619716 retained_intron
ENST00000543016 (DDX55-013) 123616558-123618778 retained_intron
ENST00000544429 (DDX55-011) 123602097-123607770 retained_intron
ENST00000544738 (DDX55-009) 123602125-123617870 nonsense_mediated_decay
ENST00000545042 (DDX55-007) 123602099-123607662 retained_intron
ENSG00000279953 (RP11-338K17.5)
 ENST00000623229 (RP11-338K17.5-001) 123649068-123650485 TEC
CIL_00006O_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029388-ENSMUSG00000029387 CGP 10090 5:124570213-124597680
GeneTranscriptPositionBiotype
ENSMUSG00000029387 (Gtf2h3)
general transcription factor IIH, polypeptide 3 		ENSMUST00000031333 (Gtf2h3-001) 124579140-124597680 protein_coding
ENSMUST00000126466 (Gtf2h3-004) 124579166-124592627 processed_transcript
ENSMUST00000142746 (Gtf2h3-002) 124590379-124596587 retained_intron
ENSMUST00000143810 (Gtf2h3-005) 124594265-124595605 retained_intron
ENSMUST00000153436 (Gtf2h3-003) 124583847-124595596 processed_transcript
ENSMUSG00000029388 (Eif2b1)
eukaryotic translation initiation factor 2B, subunit 1 (alpha) 		ENSMUST00000031334 (Eif2b1-001) 124570213-124579131 protein_coding
ENSMUST00000128920 (Eif2b1-002) 124576811-124578992 protein_coding
ENSMUST00000135163 (Eif2b1-003) 124578519-124579032 nonsense_mediated_decay
ENSMUST00000135361 (Eif2b1-005) 124573731-124579075 protein_coding
ENSMUST00000152716 (Eif2b1-004) 124571751-124574916 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006O_0001ENSDARG00000067560ENSDART00000097244ENSDART00000148734ENSDARG00000091402ENSDART00000011192CIL_00006O_0002ENSG00000111358ENST00000228955ENST00000536375ENST00000537368ENST00000537695ENST00000538533ENST00000538845ENST00000539429ENST00000539994ENST00000542279ENST00000543005ENST00000543154ENST00000543341ENST00000543415ENST00000618160ENSG00000111361ENST00000424014ENST00000452159ENST00000534960ENST00000537073ENST00000539951ENST00000543940ENSG00000111364ENST00000238146ENST00000354291ENST00000421670ENST00000536079ENST00000538744ENST00000539934ENST00000540763ENST00000541259ENST00000542286ENST00000543016ENST00000544429ENST00000544738ENST00000545042ENSG00000279953ENST00000623229CIL_00006O_0003ENSMUSG00000029387ENSMUST00000031333ENSMUST00000126466ENSMUST00000142746ENSMUST00000143810ENSMUST00000153436ENSMUSG00000029388ENSMUST00000031334ENSMUST00000128920ENSMUST00000135163ENSMUST00000135361ENSMUST00000152716
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006O_0001ENSDARG00000067560ENSDART00000097244ENSDARG00000091402ENSDART00000011192CIL_00006O_0002ENSG00000111358ENST00000228955ENST00000543341ENST00000618160ENSG00000111361ENST00000424014ENST00000452159ENST00000534960ENST00000537073ENST00000539951ENSG00000111364ENST00000238146ENST00000421670ENST00000538744ENST00000542286ENSG00000279953ENST00000623229CIL_00006O_0003ENSMUSG00000029387ENSMUST00000031333ENSMUST00000126466ENSMUST00000142746ENSMUST00000153436ENSMUSG00000029388ENSMUST00000031334ENSMUST00000135361
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000067560 ENSDART00000097244 N/A N/A N/A 3.879±3.43 N/A N/A 5.634±3.34 5.221±5.67 0.593±0.00 N/A 1.425±0.00 N/A N/A N/A
ENSDART00000148734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000091402 ENSDART00000011192 N/A N/A N/A 4.130±2.18 N/A N/A 2.390±0.67 3.430±0.00 0.322±0.00 N/A 1.009±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111358 ENST00000228955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.561±0.00 N/A N/A
ENST00000536375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543341 3.141±0.00 8.994±0.00 N/A 3.527±1.86 3.328±0.00 2.509±0.00 1.588±0.61 4.047±0.00 2.369±1.33 1.638±0.00 N/A 5.365±0.72 3.369±0.48 4.022±0.47
ENST00000543415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618160 N/A N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000111361 ENST00000424014 2.979±0.00 14.394±0.00 1.114±0.00 6.478±2.55 8.363±1.55 6.540±0.55 1.858±0.00 6.579±3.30 5.655±2.22 4.713±0.67 N/A 11.350±6.09 7.459±1.73 9.839±1.20
ENST00000452159 N/A N/A 4.863±0.00 N/A N/A N/A N/A N/A 8.841±0.00 N/A 7.902±0.00 N/A N/A N/A
ENST00000534960 N/A N/A N/A N/A N/A N/A N/A 7.894±0.00 N/A N/A N/A 9.641±0.00 N/A N/A
ENST00000537073 N/A N/A 1.911±0.00 4.147±0.00 N/A N/A N/A N/A N/A 7.592±0.00 N/A N/A N/A N/A
ENST00000539951 11.236±0.00 N/A N/A N/A 22.006±0.00 12.130±0.00 N/A 18.649±0.00 N/A N/A 9.581±0.00 N/A N/A 24.701±0.00
ENST00000543940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000111364 ENST00000238146 N/A N/A N/A 1.759±0.00 N/A N/A N/A 0.994±0.00 1.020±0.00 N/A N/A 3.378±2.04 N/A N/A
ENST00000354291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.101±0.00 2.634±0.00 5.242±0.00
ENST00000536079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.188±0.00 4.988±0.00 4.946±0.00
ENST00000539934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542286 N/A N/A 1.260±0.00 N/A N/A 4.799±0.00 N/A 1.602±0.00 1.597±0.00 N/A N/A 2.038±0.00 N/A N/A
ENST00000543016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279953 ENST00000623229 0.029±0.00 0.279±0.00 N/A 0.148±0.00 0.067±0.00 0.152±0.11 0.055±0.00 0.216±0.02 0.091±0.00 0.135±0.11 N/A 0.051±0.02 0.110±0.06 0.090±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029387 ENSMUST00000031333 N/A N/A 2.733±0.45 2.393±1.31 N/A N/A N/A 1.738±0.00 3.223±1.64 1.661±0.00 1.543±0.32 2.718±0.90 4.507±1.04 0.637±0.33
ENSMUST00000126466 N/A N/A 13.357±2.12 10.104±2.84 N/A N/A 5.971±1.18 8.430±0.00 10.476±8.37 6.743±0.00 3.121±0.27 6.933±0.00 13.291±3.46 3.661±1.44
ENSMUST00000142746 6.689±1.61 8.971±5.29 8.584±1.53 9.576±3.83 9.940±4.39 4.221±1.34 4.352±2.60 3.285±0.91 6.239±3.93 8.317±0.77 1.626±0.50 9.702±5.54 7.390±1.82 1.958±0.41
ENSMUST00000143810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153436 N/A N/A N/A N/A 12.178±2.79 N/A N/A N/A N/A N/A 2.135±0.00 9.843±1.19 9.523±2.68 N/A
ENSMUSG00000029388 ENSMUST00000031334 9.177±1.12 6.185±3.19 12.486±2.93 10.552±3.50 6.914±2.90 9.751±1.87 3.933±0.26 6.945±0.86 8.084±4.28 4.778±1.12 5.815±1.35 8.948±4.03 19.009±5.99 4.183±0.81
ENSMUST00000128920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135361 N/A N/A N/A 4.213±0.00 N/A N/A N/A N/A 11.637±0.00 N/A 9.419±1.84 15.629±0.00 20.278±9.10 2.873±0.00
ENSMUST00000152716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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