C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIH, polypeptide 3, 34kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228955 GTF2H3-002 ENSG00000111358 9606 + 12:123633829-123660829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryENST00000228955
Transcript ID Ovary
ENST00000228955 3.561±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000395 CIL_000395_0001 CGP 12:123602077-123633766
CIL_00006O CIL_00006O_0002 CGP 12:123620406-123662606

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003684 TAS damaged DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004672 IDA protein kinase activity
GO:0005654 TAS nucleoplasm
GO:0005675 IDA holo TFIIH complex
GO:0006200 IDA ATP catabolic process
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS:IEA nucleotide-excision repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006412 TAS translation
GO:0006468 IDA protein phosphorylation
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0046872 IEA metal ion binding
GO:0047485 IPI protein N-terminus binding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031333 Gtf2h3-001 protein_coding Mus_musculus 0 822
ENSMUST00000153436 Gtf2h3-003 processed_transcript Mus_musculus 0 617
ENSMUST00000142746 Gtf2h3-002 retained_intron Mus_musculus 0 472
ENSMUST00000126466 Gtf2h3-004 processed_transcript Mus_musculus 0 472
ENSMUST00000143810 Gtf2h3-005 retained_intron Mus_musculus 3e-40 171

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