C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class B, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031377 Scarb2-201 ENSMUSG00000029426 10090 - 5:92443873-92505608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031377 15.490±5.78 34.173±3.23 32.333±12.81 10.394±2.59 25.130±12.38 27.460±0.96 15.318±3.59 5.018±0.74 10.389±6.17 35.318±11.80 7.431±0.99 32.579±9.97 20.329±5.85 2.648±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0002 VISTA 5:92327753-92928377
CIL_00071G CIL_00071G_0002 CGP 5:92415540-92505608
CIL_00071J CIL_00071J_0002 CGP 5:92443873-92591279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005925 IEA focal adhesion
GO:0006622 IMP protein targeting to lysosome
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0019899 IPI enzyme binding
GO:0043202 IDA lysosomal lumen
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264896 SCARB2-001 protein_coding Homo_sapiens 0 1570
ENST00000452464 SCARB2-002 protein_coding Homo_sapiens 0 852
ENST00000502908 SCARB2-004 retained_intron Homo_sapiens 0 305

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