C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031414 Brap-001 ENSMUSG00000029458 10090 + 5:121660563-121687248 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031414
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031414 11.278±0.30 3.831±0.00 13.030±0.50 14.782±2.57 12.945±0.59 7.465±0.32 6.399±0.24 19.049±3.46 12.890±5.63 10.126±3.16 6.906±0.29 9.428±2.85 19.348±5.35 42.512±4.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000165 IEA MAPK cascade
GO:0000166 IEA nucleotide binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005737 IEA cytoplasm
GO:0007265 IEA Ras protein signal transduction
GO:0008139 IEA nuclear localization sequence binding
GO:0008270 IEA zinc ion binding
GO:0009968 IEA negative regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031965 IEA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327551 BRAP-002 protein_coding Homo_sapiens 0 1803
ENST00000419234 BRAP-001 protein_coding Homo_sapiens 0 2056
ENST00000547043 BRAP-003 retained_intron Homo_sapiens 0 1147

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