C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRCA1 associated protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029458 Brap 10090 + 5:121660563-121687248 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031414 Brap-001 121660563-121687248 protein_coding
  ENSMUST00000111765 Brap-004 121660869-121687245 protein_coding
  ENSMUST00000127703 Brap-005 121666526-121687248 protein_coding
  ENSMUST00000132491 Brap-003 121660601-121663973 retained_intron
  ENSMUST00000140996 Brap-002 121660574-121687243 nonsense_mediated_decay
  ENSMUST00000142701 Brap-007 121662050-121665614 retained_intron
  ENSMUST00000148052 Brap-006 121662080-121663705 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031414ENSMUST00000111765ENSMUST00000127703ENSMUST00000140996ENSMUST00000142701
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031414 11.278±0.30 3.831±0.00 13.030±0.50 14.782±2.57 12.945±0.59 7.465±0.32 6.399±0.24 19.049±3.46 12.890±5.63 10.126±3.16 6.906±0.29 9.428±2.85 19.348±5.35 42.512±4.73
ENSMUST00000111765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.343±1.27
ENSMUST00000127703 N/A N/A N/A 12.760±0.00 N/A N/A N/A N/A N/A N/A N/A 10.027±6.73 23.445±0.39 N/A
ENSMUST00000140996 2.115±0.00 8.330±1.58 N/A N/A 11.645±1.06 8.498±3.30 N/A 4.865±2.20 5.232±1.23 5.301±2.77 N/A 14.391±2.60 N/A N/A
ENSMUST00000142701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.284±0.74 10.314±0.96 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0000165 IEA MAPK cascade
GO:0000166 IEA nucleotide binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005737 IEA cytoplasm
GO:0007265 IEA Ras protein signal transduction
GO:0008139 IEA nuclear localization sequence binding
GO:0008270 IEA zinc ion binding
GO:0009968 IEA negative regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031965 IEA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008560 brap BRCA1 associated protein protein_coding Danio_rerio
ENSG00000089234 BRAP BRCA1 associated protein protein_coding Homo_sapiens

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