C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1 associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000419234 BRAP-001 ENSG00000089234 9606 - 12:111642146-111685986 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000419234
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000419234 3.153±0.00 3.310±0.00 2.104±0.00 3.670±0.12 3.920±0.13 3.511±0.97 1.759±0.41 2.589±0.43 3.441±1.75 1.984±1.08 3.781±2.60 3.816±0.98 3.424±0.15 5.829±1.28

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0000165 IDA MAPK cascade
GO:0000166 IEA nucleotide binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0007265 IDA Ras protein signal transduction
GO:0008139 IDA nuclear localization sequence binding
GO:0008270 IEA zinc ion binding
GO:0009968 IDA negative regulation of signal transduction
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031965 IDA nuclear membrane
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031414 Brap-001 protein_coding Mus_musculus 0 2056
ENSMUST00000111765 Brap-004 protein_coding Mus_musculus 0 1803
ENSMUST00000140996 Brap-002 nonsense_mediated_decay Mus_musculus 0 1515
ENSMUST00000127703 Brap-005 protein_coding Mus_musculus 0 1297
ENSMUST00000142701 Brap-007 retained_intron Mus_musculus 0 470

Loading