C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031434 Rnf34-201 ENSMUSG00000029474 10090 + 5:122850188-122868945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031434 12.642±4.76 6.339±0.32 10.524±1.42 21.435±2.12 7.398±1.77 9.273±2.28 12.747±0.85 12.410±1.60 5.197±1.69 12.453±0.62 9.038±0.64 16.694±4.83 21.094±2.94 27.323±4.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G3 CIL_0007G3_0003 CGP 5:122787469-122868945
CIL_0007G4 CIL_0007G4_0003 CGP 5:122850188-123015080

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IEA p53 binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005886 ISS plasma membrane
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031625 IEA ubiquitin protein ligase binding
GO:0035872 ISS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0042787 IMP protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0061630 ISS ubiquitin protein ligase activity
GO:0070417 IMP cellular response to cold
GO:0070936 ISS protein K48-linked ubiquitination
GO:1901797 ISS negative regulation of signal transduction by p53 class mediator
GO:1901981 ISS phosphatidylinositol phosphate binding
GO:1902042 ISS negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000374 IMP regulation of oxygen metabolic process
GO:2001271 ISS negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361234 RNF34-001 protein_coding Homo_sapiens 0 1423
ENST00000392464 RNF34-005 protein_coding Homo_sapiens 0 1243
ENST00000392465 RNF34-002 protein_coding Homo_sapiens 0 1323
ENST00000553407 RNF34-003 retained_intron Homo_sapiens 0 675
ENST00000554484 RNF34-004 retained_intron Homo_sapiens 0 660
ENST00000554606 RNF34-006 protein_coding Homo_sapiens 0 599
ENST00000554868 RNF34-009 protein_coding Homo_sapiens 0 296
ENST00000556562 RNF34-007 retained_intron Homo_sapiens 0 374
ENST00000557402 RNF34-010 protein_coding Homo_sapiens 2e-36 156
ENST00000613529 RNF34-201 protein_coding Homo_sapiens 0 676

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