C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007G4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054036-ENSDARG00000046010 CGP 7955 10:43130773-43202258
GeneTranscriptPositionBiotype
ENSDARG00000046010 (kdm2bb)
lysine (K)-specific demethylase 2Bb 		ENSDART00000102530 (kdm2bb-201) 43194428-43202258 protein_coding
ENSDARG00000054036 (rnf34b)
ring finger protein 34b 		ENSDART00000076168 (rnf34b-201) 43130773-43181938 protein_coding
ENSDART00000128698 (rnf34b-202) 43130865-43181916 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007G4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170633-ENSG00000089094 CGP 9606 12:121400041-121581015
GeneTranscriptPositionBiotype
ENSG00000089094 (KDM2B)
lysine (K)-specific demethylase 2B 		ENST00000377069 (KDM2B-005) 121429097-121580459 protein_coding
ENST00000377071 (KDM2B-001) 121429777-121580984 protein_coding
ENST00000446152 (KDM2B-006) 121509572-121579644 protein_coding
ENST00000536036 (KDM2B-023) 121439913-121441244 retained_intron
ENST00000536437 (KDM2B-201) 121429871-121580954 protein_coding
ENST00000538046 (KDM2B-004) 121493846-121581015 protein_coding
ENST00000538243 (KDM2B-013) 121444015-121470553 retained_intron
ENST00000538379 (KDM2B-015) 121510007-121536069 protein_coding
ENST00000538503 (KDM2B-020) 121429509-121549639 retained_intron
ENST00000539394 (KDM2B-007) 121532846-121580225 protein_coding
ENST00000540191 (KDM2B-008) 121574365-121580140 retained_intron
ENST00000541318 (KDM2B-014) 121513328-121536128 protein_coding
ENST00000541511 (KDM2B-012) 121521046-121536235 protein_coding
ENST00000542030 (KDM2B-017) 121509943-121524795 protein_coding
ENST00000542973 (KDM2B-022) 121429509-121509706 protein_coding
ENST00000543025 (KDM2B-002) 121429871-121580954 nonsense_mediated_decay
ENST00000543852 (KDM2B-011) 121516347-121537616 protein_coding
ENST00000545022 (KDM2B-016) 121513293-121534660 protein_coding
ENST00000611216 (KDM2B-202) 121429099-121581015 protein_coding
ENSG00000170633 (RNF34)
ring finger protein 34, E3 ubiquitin protein ligase 		ENST00000361234 (RNF34-001) 121400041-121424351 protein_coding
ENST00000392464 (RNF34-005) 121400144-121430623 protein_coding
ENST00000392465 (RNF34-002) 121400119-121424348 protein_coding
ENST00000553407 (RNF34-003) 121400129-121418740 retained_intron
ENST00000554484 (RNF34-004) 121419898-121424349 retained_intron
ENST00000554606 (RNF34-006) 121400142-121417789 protein_coding
ENST00000554868 (RNF34-009) 121409455-121417521 protein_coding
ENST00000555076 (RNF34-008) 121400147-121423906 protein_coding
ENST00000556562 (RNF34-007) 121400128-121416609 retained_intron
ENST00000557402 (RNF34-010) 121409475-121416286 protein_coding
ENST00000613529 (RNF34-201) 121400083-121424352 protein_coding
ENSG00000277819 (MIR7107)
microRNA 7107 		ENST00000611489 (MIR7107-201) 121444273-121444352 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007G4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029474-ENSMUSG00000029475 CGP 10090 5:122850188-123015080
GeneTranscriptPositionBiotype
ENSMUSG00000029474 (Rnf34)
ring finger protein 34 		ENSMUST00000031434 (Rnf34-201) 122850188-122868945 protein_coding
ENSMUSG00000029475 (Kdm2b)
lysine (K)-specific demethylase 2B 		ENSMUST00000031435 (Kdm2b-009) 122870668-122900355 protein_coding
ENSMUST00000046073 (Kdm2b-001) 122870668-122989099 protein_coding
ENSMUST00000086200 (Kdm2b-201) 122870681-122988533 protein_coding
ENSMUST00000118027 (Kdm2b-003) 122870679-122989306 protein_coding
ENSMUST00000121739 (Kdm2b-002) 122871705-122989823 protein_coding
ENSMUST00000123479 (Kdm2b-005) 122887847-122989092 retained_intron
ENSMUST00000127403 (Kdm2b-007) 122871291-122989794 nonsense_mediated_decay
ENSMUST00000129998 (Kdm2b-008) 122883428-122922107 processed_transcript
ENSMUST00000132419 (Kdm2b-017) 122880635-122882233 retained_intron
ENSMUST00000134501 (Kdm2b-004) 122940615-122989099 retained_intron
ENSMUST00000138929 (Kdm2b-012) 122934836-122953117 processed_transcript
ENSMUST00000139674 (Kdm2b-010) 122875482-122881085 retained_intron
ENSMUST00000143273 (Kdm2b-015) 122932658-122947994 processed_transcript
ENSMUST00000145082 (Kdm2b-013) 122932575-122952506 protein_coding
ENSMUST00000147544 (Kdm2b-014) 122934856-122951990 processed_transcript
ENSMUST00000150543 (Kdm2b-011) 122947735-122984971 processed_transcript
ENSMUST00000152872 (Kdm2b-016) 122880508-122888580 protein_coding
ENSMUST00000156474 (Kdm2b-006) 122932472-122988536 protein_coding
ENSMUST00000172729 (Kdm2b-020) 122987683-123012874 protein_coding
ENSMUST00000173312 (Kdm2b-022) 123007579-123015080 processed_transcript
ENSMUST00000173355 (Kdm2b-019) 122882216-122917724 processed_transcript
ENSMUST00000173670 (Kdm2b-021) 123007464-123012878 processed_transcript
ENSMUST00000174357 (Kdm2b-018) 122883438-122921548 retained_intron
ENSMUSG00000049686 (Orai1)
ORAI calcium release-activated calcium modulator 1 		ENSMUST00000051016 (Orai1-201) 123015074-123030156 protein_coding
ENSMUST00000121652 (Orai1-001) 123015074-123030450 protein_coding
ENSMUST00000152213 (Orai1-002) 123015338-123029465 processed_transcript
ENSMUSG00000056735 (A930024E05Rik)
RIKEN cDNA A930024E05 gene 		ENSMUST00000148466 (A930024E05Rik-001) 122989354-122998345 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007G4_0001ENSDARG00000046010ENSDART00000102530ENSDARG00000054036ENSDART00000076168ENSDART00000128698CIL_0007G4_0002ENSG00000089094ENST00000377069ENST00000377071ENST00000446152ENST00000536036ENST00000536437ENST00000538046ENST00000538243ENST00000538379ENST00000538503ENST00000539394ENST00000540191ENST00000541318ENST00000541511ENST00000542030ENST00000542973ENST00000543025ENST00000543852ENST00000545022ENST00000611216ENSG00000170633ENST00000361234ENST00000392464ENST00000392465ENST00000553407ENST00000554484ENST00000554606ENST00000554868ENST00000555076ENST00000556562ENST00000557402ENST00000613529ENSG00000277819ENST00000611489CIL_0007G4_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007G4_0001ENSDARG00000046010ENSDART00000102530ENSDARG00000054036ENSDART00000076168ENSDART00000128698CIL_0007G4_0002ENSG00000089094ENST00000377069ENST00000377071ENST00000538243ENST00000542973ENST00000611216ENSG00000170633ENST00000361234ENST00000392465ENST00000554484ENST00000613529ENSG00000277819ENST00000611489CIL_0007G4_0003ENSMUSG00000029474ENSMUST00000031434ENSMUSG00000029475ENSMUST00000031435ENSMUST00000046073ENSMUST00000086200ENSMUST00000118027ENSMUST00000121739ENSMUSG00000049686ENSMUST00000051016ENSMUST00000121652ENSMUSG00000056735ENSMUST00000148466
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000046010 ENSDART00000102530 N/A N/A N/A 9.281±2.83 N/A N/A 6.597±1.27 8.796±5.58 0.129±0.00 N/A 1.769±0.00 N/A N/A N/A
ENSDARG00000054036 ENSDART00000076168 N/A N/A N/A 1.300±1.34 N/A N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A
ENSDART00000128698 N/A N/A N/A 0.926±0.00 N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089094 ENST00000377069 N/A N/A N/A 1.194±0.00 1.479±0.23 N/A N/A N/A N/A N/A N/A 2.866±0.36 1.074±0.00 4.159±0.00
ENST00000377071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.926±0.00 N/A N/A
ENST00000446152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538243 N/A N/A 0.772±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542973 3.260±0.00 10.525±0.00 N/A N/A 2.732±0.49 N/A N/A 2.079±0.68 1.455±0.19 N/A 1.692±0.00 12.974±7.37 4.888±1.94 7.494±0.26
ENST00000543025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611216 N/A 5.961±0.00 N/A 3.850±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170633 ENST00000361234 4.924±0.00 N/A 1.396±0.00 10.301±0.62 6.834±0.41 4.825±0.74 5.217±2.73 4.288±1.68 4.204±1.91 6.259±0.55 10.590±6.73 11.742±5.10 8.478±3.05 11.303±1.17
ENST00000392464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.382±0.00
ENST00000553407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554484 N/A N/A 1.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613529 2.866±0.00 N/A N/A 8.489±0.00 N/A 6.067±0.00 N/A 4.209±0.00 2.105±0.00 N/A N/A N/A N/A 9.517±0.00
ENSG00000277819 ENST00000611489 0.825±0.00 0.433±0.00 N/A N/A 0.444±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029474 ENSMUST00000031434 12.642±4.76 6.339±0.32 10.524±1.42 21.435±2.12 7.398±1.77 9.273±2.28 12.747±0.85 12.410±1.60 5.197±1.69 12.453±0.62 9.038±0.64 16.694±4.83 21.094±2.94 27.323±4.07
ENSMUSG00000029475 ENSMUST00000031435 7.025±3.34 5.621±0.97 6.046±0.21 27.142±2.72 11.737±2.76 7.400±1.24 2.410±0.08 3.548±0.21 5.929±3.33 6.631±0.32 N/A 11.581±3.13 6.860±2.36 8.567±2.18
ENSMUST00000046073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.47 1.782±0.00 N/A N/A
ENSMUST00000086200 N/A N/A 4.363±0.55 N/A N/A N/A N/A N/A N/A N/A 1.720±0.48 3.011±0.00 N/A N/A
ENSMUST00000118027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.159±0.28 1.928±0.39 N/A N/A
ENSMUST00000121739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.457±0.00 N/A N/A
ENSMUST00000123479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049686 ENSMUST00000051016 20.204±1.91 17.861±3.95 21.977±0.25 N/A 39.554±4.03 38.111±2.99 12.738±1.92 25.282±5.68 10.886±1.84 40.579±3.79 13.992±3.62 24.138±4.43 17.320±8.45 32.623±2.68
ENSMUST00000121652 4.810±0.00 N/A N/A N/A 9.929±1.41 N/A 4.152±0.36 7.653±0.66 4.046±0.90 7.765±0.73 4.685±0.18 5.691±0.62 7.218±2.15 N/A
ENSMUST00000152213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056735 ENSMUST00000148466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.330±2.81

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