C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031545 Foxp2-001 ENSMUSG00000029563 10090 + 6:15185506-15441201 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031545
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031545 0.123±0.08 4.102±0.37 6.085±3.35 0.154±0.05 1.266±0.42 0.457±0.14 0.101±0.01 0.257±0.17 0.593±0.16 0.056±0.02 2.393±0.44 0.030±0.02 0.066±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084L CIL_00084L_0002 VISTA 6:14454338-15055302
CIL_00090T CIL_00090T_0002 VISTA 6:14680242-15281244
CIL_000412 CIL_000412_0002 CGP 6:14713822-15441977
CIL_00095R CIL_00095R_0002 VISTA 6:14882427-15483744
CIL_0007XX CIL_0007XX_0002 VISTA 6:14885821-15487224
CIL_00092C CIL_00092C_0002 VISTA 6:14887323-15489118
CIL_00092B CIL_00092B_0002 VISTA 6:14892947-15494270
CIL_00082W CIL_00082W_0002 VISTA 6:14901156-15503663
CIL_000411 CIL_000411_0002 CGP 6:14901349-15802169

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0003677 IDA:ISS DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007519 IGI skeletal muscle tissue development
GO:0009791 IMP post-embryonic development
GO:0021549 IMP cerebellum development
GO:0021757 ISS caudate nucleus development
GO:0021758 ISS putamen development
GO:0030324 IGI lung development
GO:0040007 IMP growth
GO:0042297 IMP vocal learning
GO:0042803 IPI:ISS protein homodimerization activity
GO:0043010 IMP camera-type eye development
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048286 IMP lung alveolus development
GO:0048745 IGI smooth muscle tissue development
GO:0050679 IGI positive regulation of epithelial cell proliferation
GO:0060013 IMP righting reflex
GO:0060501 IGI positive regulation of epithelial cell proliferation involved in lung morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060861 foxp2-201 protein_coding Danio_rerio 0 752
ENSDART00000134820 foxp2-008 protein_coding Danio_rerio 0 752
ENSDART00000142087 foxp2-007 protein_coding Danio_rerio 0 752
ENSDART00000136572 foxp2-005 processed_transcript Danio_rerio 0 364
ENSDART00000114288 foxp4-201 protein_coding Danio_rerio 2e-18 99
ENSDART00000122918 foxp4-202 protein_coding Danio_rerio 3e-18 99
ENST00000318789 FOXP1-001 protein_coding Homo_sapiens 0 459
ENST00000327590 FOXP1-003 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000350908 FOXP2-001 protein_coding Homo_sapiens 0 3910
ENST00000360232 FOXP2-017 protein_coding Homo_sapiens 0 1827
ENST00000378237 FOXP2-010 protein_coding Homo_sapiens 0 1628
ENST00000390668 FOXP2-016 protein_coding Homo_sapiens 0 1393
ENST00000393489 FOXP2-020 protein_coding Homo_sapiens 0 2772
ENST00000393491 FOXP2-201 protein_coding Homo_sapiens 0 2758
ENST00000393494 FOXP2-014 protein_coding Homo_sapiens 0 3502
ENST00000393495 FOXP2-018 protein_coding Homo_sapiens 0 662
ENST00000393498 FOXP2-005 protein_coding Homo_sapiens 0 2809
ENST00000403559 FOXP2-202 protein_coding Homo_sapiens 0 2891
ENST00000408937 FOXP2-004 protein_coding Homo_sapiens 0 3066
ENST00000412402 FOXP2-006 nonsense_mediated_decay Homo_sapiens 0 1327
ENST00000440349 FOXP2-002 nonsense_mediated_decay Homo_sapiens 0 340
ENST00000441290 FOXP2-008 nonsense_mediated_decay Homo_sapiens 0 1216
ENST00000452963 FOXP2-015 protein_coding Homo_sapiens 0 800
ENST00000459666 FOXP2-009 processed_transcript Homo_sapiens 0 614
ENST00000462331 FOXP2-007 protein_coding Homo_sapiens 0 758
ENST00000475937 FOXP1-004 protein_coding Homo_sapiens 0 459
ENST00000484350 FOXP1-005 protein_coding Homo_sapiens 0 459
ENST00000491238 FOXP1-011 protein_coding Homo_sapiens 0 459
ENST00000493089 FOXP1-002 protein_coding Homo_sapiens 0 468
ENST00000497355 FOXP1-009 protein_coding Homo_sapiens 0 459
ENST00000498215 FOXP1-006 protein_coding Homo_sapiens 0 459
ENST00000614176 FOXP1-201 protein_coding Homo_sapiens 0 459
ENST00000614183 FOXP1-025 processed_transcript Homo_sapiens 0 331

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