C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000408937 FOXP2-004 ENSG00000128573 9606 + 7:114414997-114693772 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartMuscleOvaryENST00000408937
Transcript ID Colon Heart Muscle Ovary
ENST00000408937 1.447±0.00 0.025±0.00 0.328±0.00 0.174±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084L CIL_00084L_0001 VISTA 7:113618068-114219050
CIL_00090T CIL_00090T_0001 VISTA 7:113853490-114454507
CIL_000412 CIL_000412_0001 CGP 7:113876777-114693772
CIL_000411 CIL_000411_0001 CGP 7:114086327-115019916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003677 IDA DNA binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007519 IEA skeletal muscle tissue development
GO:0009791 IEA post-embryonic development
GO:0021549 IEA cerebellum development
GO:0021757 IMP caudate nucleus development
GO:0021758 IMP putamen development
GO:0021987 IEP cerebral cortex development
GO:0030324 IEA lung development
GO:0040007 IEA growth
GO:0042297 IEA vocal learning
GO:0042803 IDA protein homodimerization activity
GO:0043010 IEA camera-type eye development
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0048286 IEA lung alveolus development
GO:0048745 IEA smooth muscle tissue development
GO:0050679 IEA positive regulation of epithelial cell proliferation
GO:0060013 IEA righting reflex
GO:0060501 IEA positive regulation of epithelial cell proliferation involved in lung morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115474 Foxp2-006 protein_coding Mus_musculus 0 3714
ENSMUST00000115477 Foxp2-201 protein_coding Mus_musculus 0 3066
ENSMUST00000031545 Foxp2-001 protein_coding Mus_musculus 0 3066
ENSMUST00000115472 Foxp2-007 protein_coding Mus_musculus 0 2808
ENSMUST00000151060 Foxp2-005 retained_intron Mus_musculus 0 1934
ENSMUST00000131414 Foxp2-020 protein_coding Mus_musculus 0 1912
ENSMUST00000115469 Foxp2-017 protein_coding Mus_musculus 0 1393
ENSMUST00000115475 Foxp2-015 nonsense_mediated_decay Mus_musculus 0 1327
ENSMUST00000151301 Foxp2-019 protein_coding Mus_musculus 0 1120
ENSMUST00000118133 Foxp2-013 protein_coding Mus_musculus 0 857
ENSMUST00000137628 Foxp2-018 protein_coding Mus_musculus 0 662
ENSMUST00000140557 Foxp2-014 protein_coding Mus_musculus 0 564
ENSMUST00000138273 Foxp2-004 retained_intron Mus_musculus 0 444
ENSMUST00000128567 Foxp2-009 protein_coding Mus_musculus 0 442
ENSMUST00000115470 Foxp2-002 protein_coding Mus_musculus 0 309
ENSMUST00000152563 Foxp2-016 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000154448 Foxp2-012 protein_coding Mus_musculus 0 217
ENSMUST00000159788 Foxp2-021 processed_transcript Mus_musculus 9e-31 141

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