C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methylmalonic aciduria (cobalamin deficiency) type B homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031560 Mmab-001 ENSMUSG00000029575 10090 - 5:114431034-114444059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031560 9.301±4.23 11.436±3.42 5.381±0.31 4.489±0.65 7.680±0.61 4.926±1.00 9.060±1.64 7.083±0.65 8.716±2.95 4.047±0.68 13.330±0.56 4.166±0.96 2.901±2.21 0.473±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000401 CIL_000401_0002 CGP 5:114380628-114444059
CIL_0001GN CIL_0001GN_0003 CGP 5:114431034-114460591

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0008817 ISO cob(I)yrinic acid a,c-diamide adenosyltransferase activity
GO:0009235 IC cobalamin metabolic process
GO:0009236 IEA cobalamin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000420167 MMAB-007 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000503497 MMAB-008 nonsense_mediated_decay Homo_sapiens 0.00000000000001 84
ENST00000537496 MMAB-004 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000540016 MMAB-003 protein_coding Homo_sapiens 0 479
ENST00000541763 MMAB-005 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000542390 MMAB-010 retained_intron Homo_sapiens 0 420
ENST00000544051 MMAB-002 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000545712 MMAB-001 protein_coding Homo_sapiens 0 760

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