C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415871 TSPAN12-002 ENSG00000106025 9606 - 7:120788374-120858323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000415871
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000415871 3.995±0.00 1.347±0.00 1.712±0.00 0.465±0.22 2.035±1.03 2.581±0.26 4.102±2.56 3.878±0.00 0.234±0.00 2.346±1.59 2.415±0.00 0.641±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U7 CIL_0005U7_0002 CGP 7:120273668-120858402
CIL_0007SO CIL_0007SO_0001 VISTA 7:120596713-121200737
CIL_0004XL CIL_0004XL_0002 CGP 7:120787320-120977216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005887 ISS integral component of plasma membrane
GO:0007166 ISS cell surface receptor signaling pathway
GO:0010842 ISS retina layer formation
GO:0016020 TAS membrane
GO:0016021 TAS:IEA integral component of membrane
GO:0045765 ISS regulation of angiogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031678 Tspan12-001 protein_coding Mus_musculus 0 1271
ENSMUST00000123116 Tspan12-004 protein_coding Mus_musculus 0 819
ENSMUST00000120965 Tspan12-002 protein_coding Mus_musculus 0 636
ENSMUST00000134635 Tspan12-003 protein_coding Mus_musculus 0 560
ENSMUST00000143531 Tspan12-005 processed_transcript Mus_musculus 4.99983e-42 176

Loading