C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hect domain and RLD 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031817 Herc6-201 ENSMUSG00000029798 10090 + 6:57580992-57665136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031817 1.293±0.00 3.122±1.71 1.526±0.02 0.175±0.00 1.081±0.19 0.634±0.27 0.317±0.02 0.633±0.21 1.990±0.88 1.892±0.53 0.174±0.07 1.945±0.78 0.387±0.11 0.795±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KK CIL_0000KK_0002 CGP 6:57506502-57665136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264346 HERC6-001 protein_coding Homo_sapiens 0 1123
ENST00000273960 HERC6-201 protein_coding Homo_sapiens 0 556
ENST00000380265 HERC6-003 protein_coding Homo_sapiens 0 1090
ENST00000502870 HERC6-006 protein_coding Homo_sapiens 0 396
ENST00000504905 HERC6-002 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000506714 HERC6-004 retained_intron Homo_sapiens 0 556

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