C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031902 Trpv6-201 ENSMUSG00000029868 10090 - 6:41620621-41636405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031902
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031902 1.077±1.05 0.043±0.01 0.126±0.01 0.445±0.03 0.474±0.25 3.784±0.74 0.018±0.00 0.276±0.07 0.037±0.02 1.119±0.31 0.018±0.00 1.683±1.10 5.344±4.70 0.581±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039T CIL_00039T_0002 CGP 6:41605482-41636405
CIL_0006VI CIL_0006VI_0002 CGP 6:41620621-41680723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IDA calcium channel activity
GO:0005516 IEA calmodulin binding
GO:0005886 IEA plasma membrane
GO:0006816 IDA calcium ion transport
GO:0016021 ISS integral component of membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265310 TRPV5-001 protein_coding Homo_sapiens 0 1522
ENST00000359396 TRPV6-001 protein_coding Homo_sapiens 0 2479
ENST00000436401 TRPV6-006 protein_coding Homo_sapiens 0 490
ENST00000439304 TRPV5-003 protein_coding Homo_sapiens 0 876
ENST00000442623 TRPV5-002 protein_coding Homo_sapiens 0 782
ENST00000463646 TRPV6-201 protein_coding Homo_sapiens 0 1934
ENST00000474388 TRPV6-009 retained_intron Homo_sapiens 0 246
ENST00000485138 TRPV6-004 retained_intron Homo_sapiens 0 981
ENST00000489123 TRPV6-008 retained_intron Homo_sapiens 5.04467e-44 182
ENST00000611485 TRPV6-202 protein_coding Homo_sapiens 0 2501
ENST00000615386 TRPV6-005 retained_intron Homo_sapiens 0 1941
ENST00000619250 TRPV6-003 retained_intron Homo_sapiens 0 582
ENST00000621710 TRPV5-201 protein_coding Homo_sapiens 0 1522

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