C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 210
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032179 Nup210-002 ENSMUSG00000030091 10090 - 6:91013068-91116829 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032179 1.932±1.71 0.792±0.24 0.231±0.01 4.504±3.92 9.064±4.02 3.291±0.22 0.468±0.10 2.587±0.33 5.541±4.91 6.147±0.96 6.125±1.12 2.121±0.58 3.160±2.00 1.220±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051B CIL_00051B_0002 CGP 6:90659598-91116829
CIL_000518 CIL_000518_0002 CGP 6:91013068-91174692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005635 IDA nuclear envelope
GO:0005643 ISO nuclear pore
GO:0005783 IEA endoplasmic reticulum
GO:0015031 IEA protein transport
GO:0046983 IEA protein dimerization activity
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092389 nup210-201 protein_coding Danio_rerio 0 427
ENST00000254508 NUP210-001 protein_coding Homo_sapiens 0 5168
ENST00000357061 NUP210P1-002 processed_transcript Homo_sapiens 1e-26 124
ENST00000420141 NUP210-002 retained_intron Homo_sapiens 0 2811
ENST00000479519 NUP210-003 retained_intron Homo_sapiens 0 438
ENST00000485755 NUP210-004 processed_transcript Homo_sapiens 4e-34 148
ENST00000504322 NUP210P1-001 transcribed_processed_pseudogene Homo_sapiens 0 289
ENST00000514993 NUP210P1-003 processed_transcript Homo_sapiens 3e-25 119

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