C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: xeroderma pigmentosum, complementation group C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032182 Xpc-001 ENSMUSG00000030094 10090 - 6:91489305-91515884 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032182
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032182 7.087±0.69 3.135±0.15 7.618±1.30 6.130±0.61 4.355±0.93 3.491±1.19 2.376±0.70 9.937±0.41 2.936±0.29 9.713±1.02 3.321±0.48 9.170±2.71 7.667±2.68 1.835±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GU CIL_0007GU_0002 CGP 6:91489305-91522625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000715 IEA nucleotide-excision repair, DNA damage recognition
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006281 IMP DNA repair
GO:0006289 IDA nucleotide-excision repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0010224 IMP response to UV-B
GO:0031573 IGI intra-S DNA damage checkpoint
GO:0042493 IEA response to drug
GO:0070062 IEA extracellular vesicular exosome
GO:0071942 ISS XPC complex
GO:1901990 IEA regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285021 XPC-001 protein_coding Homo_sapiens 0 2006
ENST00000427795 XPC-006 retained_intron Homo_sapiens 0 368
ENST00000476581 XPC-002 nonsense_mediated_decay Homo_sapiens 0 1827

Loading