C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 7 interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032335 Atf7ip-001 ENSMUSG00000030213 10090 + 6:136518802-136611038 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032335 5.874±2.99 6.311±0.39 7.826±3.37 14.105±7.78 9.100±3.27 5.118±0.71 7.132±0.43 3.459±1.16 3.556±2.49 12.292±2.78 3.520±0.47 8.145±2.37 4.136±1.26 3.416±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096F CIL_00096F_0002 VISTA 6:136167244-136769677
CIL_00082T CIL_00082T_0002 VISTA 6:136168119-136771874
CIL_0003H6 CIL_0003H6_0002 CGP 6:136518802-136661928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005634 ISS nucleus
GO:0005667 IDA transcription factor complex
GO:0006200 IDA ATP catabolic process
GO:0006306 ISS DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0016887 IDA ATPase activity
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045898 ISS regulation of RNA polymerase II transcriptional preinitiation complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261168 ATF7IP-201 protein_coding Homo_sapiens 0 2857
ENST00000535738 ATF7IP-008 protein_coding Homo_sapiens 0 366
ENST00000536444 ATF7IP-001 protein_coding Homo_sapiens 0 2867
ENST00000537653 ATF7IP-003 retained_intron Homo_sapiens 0 1657
ENST00000538511 ATF7IP-021 protein_coding Homo_sapiens 0 405
ENST00000539659 ATF7IP-026 processed_transcript Homo_sapiens 0 819
ENST00000540793 ATF7IP-024 protein_coding Homo_sapiens 0 2822
ENST00000541654 ATF7IP-027 processed_transcript Homo_sapiens 0 811
ENST00000543189 ATF7IP-004 protein_coding Homo_sapiens 0 2028
ENST00000544627 ATF7IP-002 protein_coding Homo_sapiens 0 2857

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