C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 7 interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536444 ATF7IP-001 ENSG00000171681 9606 + 12:14365729-14502931 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000536444
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000536444 2.065±0.00 0.554±0.00 1.485±0.00 1.726±0.00 0.725±0.00 2.241±0.00 0.848±0.00 1.686±0.00 3.792±0.00 1.317±0.00 4.190±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XF CIL_0006XF_0002 CGP 12:13537337-14502935
CIL_00096F CIL_00096F_0001 VISTA 12:13956439-14558986
CIL_00082T CIL_00082T_0001 VISTA 12:13957329-14561410
CIL_0003H6 CIL_0003H6_0001 CGP 12:14365632-14568349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006306 IDA DNA methylation
GO:0006351 IEA transcription, DNA-templated
GO:0016032 IEA viral process
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045898 IDA regulation of RNA polymerase II transcriptional preinitiation complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032335 Atf7ip-001 protein_coding Mus_musculus 0 2867
ENSMUST00000187429 Atf7ip-003 protein_coding Mus_musculus 0 1496
ENSMUST00000185332 Atf7ip-004 retained_intron Mus_musculus 0 1297
ENSMUST00000186577 Atf7ip-007 protein_coding Mus_musculus 0 604

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