C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 8-oxoguanine DNA-glycosylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032406 Ogg1-001 ENSMUSG00000030271 10090 + 6:113326972-113334188 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032406
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032406 14.095±0.01 7.960±0.00 9.208±0.00 10.523±1.59 9.033±0.17 8.249±1.04 5.861±1.57 13.013±0.31 4.020±0.41 11.494±1.88 6.307±1.37 8.112±4.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WL CIL_0002WL_0002 CGP 6:113307181-113335068
CIL_000243 CIL_000243_0002 CGP 6:113326972-113343984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000702 TAS oxidized base lesion DNA N-glycosylase activity
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0002526 IEA acute inflammatory response
GO:0003684 IEA damaged DNA binding
GO:0005515 IEA protein binding
GO:0005634 IMP nucleus
GO:0005654 ISS nucleoplasm
GO:0005739 IMP mitochondrion
GO:0006281 IMP DNA repair
GO:0006284 IMP base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006979 ISS response to oxidative stress
GO:0007568 IEA aging
GO:0008017 IDA microtubule binding
GO:0008534 IMP oxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0009314 ISS response to radiation
GO:0016363 ISS nuclear matrix
GO:0016607 ISS nuclear speck
GO:0019104 TAS DNA N-glycosylase activity
GO:0032355 IEA response to estradiol
GO:0033158 ISS regulation of protein import into nucleus, translocation
GO:0034039 IMP 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
GO:0042493 IEA response to drug
GO:0043066 IEA negative regulation of apoptotic process
GO:0045471 IEA response to ethanol
GO:0051593 IEA response to folic acid
GO:0071276 IEA cellular response to cadmium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256460 CAMK1-001 protein_coding Homo_sapiens 6e-22 110
ENST00000302003 OGG1-003 protein_coding Homo_sapiens 0 981
ENST00000302008 OGG1-006 protein_coding Homo_sapiens 0 974
ENST00000302036 OGG1-001 protein_coding Homo_sapiens 0 974
ENST00000339511 OGG1-007 protein_coding Homo_sapiens 0 976
ENST00000344629 OGG1-002 protein_coding Homo_sapiens 0 1055
ENST00000383825 OGG1-009 processed_transcript Homo_sapiens 0.00000000000001 84
ENST00000416333 OGG1-010 protein_coding Homo_sapiens 0 257
ENST00000421120 CAMK1-005 protein_coding Homo_sapiens 4e-22 110
ENST00000425665 OGG1-012 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000429146 OGG1-014 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000441094 OGG1-013 protein_coding Homo_sapiens 0 632
ENST00000449570 OGG1-008 protein_coding Homo_sapiens 0 974
ENST00000482803 CAMK1-004 retained_intron Homo_sapiens 1e-19 100
ENST00000496534 CAMK1-002 retained_intron Homo_sapiens 6e-22 110
ENST00000602976 OGG1-017 retained_intron Homo_sapiens 2e-21 110

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