C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, GABA), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032451 Slc6a11-201 ENSMUSG00000030307 10090 + 6:114131241-114249886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032451
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032451 0.009±0.00 0.056±0.03 0.065±0.04 15.721±6.78 0.028±0.01 1.574±0.31 0.011±0.00 0.013±0.01 0.026±0.00 0.023±0.00 1.251±0.71 0.015±0.01 0.424±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NW CIL_0001NW_0002 CGP 6:113745669-114249886
CIL_0001LQ CIL_0001LQ_0002 CGP 6:114131241-114317522

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005737 IEA cytoplasm
GO:0005887 IEA integral component of plasma membrane
GO:0007420 IEA brain development
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016020 IEA membrane
GO:0042165 IEA neurotransmitter binding
GO:0042493 IEA response to drug
GO:0042995 IEA cell projection
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254488 SLC6A11-001 protein_coding Homo_sapiens 0 2252
ENST00000454147 SLC6A11-002 protein_coding Homo_sapiens 0 732

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