C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157087-ENSG00000132164 CGP 9606 3:10324023-10940733
GeneTranscriptPositionBiotype
ENSG00000132164 (SLC6A11)
solute carrier family 6 (neurotransmitter transporter), member 11 		ENST00000254488 (SLC6A11-001) 10816200-10940733 protein_coding
ENST00000454147 (SLC6A11-002) 10816201-10825498 protein_coding
ENST00000464828 (SLC6A11-003) 10933966-10935397 retained_intron
ENSG00000157087 (ATP2B2)
ATPase, Ca++ transporting, plasma membrane 2 		ENST00000352432 (ATP2B2-001) 10324023-10449613 protein_coding
ENST00000360273 (ATP2B2-201) 10324023-10505584 protein_coding
ENST00000383800 (ATP2B2-002) 10324023-10505657 protein_coding
ENST00000397077 (ATP2B2-005) 10324023-10708031 protein_coding
ENST00000452124 (ATP2B2-003) 10328098-10410675 protein_coding
ENST00000460129 (ATP2B2-004) 10324023-10534133 nonsense_mediated_decay
ENST00000467702 (ATP2B2-006) 10328446-10336300 processed_transcript
ENST00000468426 (ATP2B2-009) 10328811-10332324 processed_transcript
ENST00000480680 (ATP2B2-008) 10387884-10505584 retained_intron
ENSG00000224771 (ATP2B2-IT2)
ATP2B2 intronic transcript 2 (non-protein coding) 		ENST00000419591 (ATP2B2-IT2-001) 10626021-10626807 sense_intronic
ENSG00000226567 (LINC00606)
long intergenic non-protein coding RNA 606 		ENST00000412578 (LINC00606-001) 10759484-10764192 lincRNA
ENST00000436060 (LINC00606-002) 10761706-10764181 lincRNA
ENSG00000236999 (ATP2B2-IT1)
ATP2B2 intronic transcript 1 (non-protein coding) 		ENST00000440152 (ATP2B2-IT1-001) 10566255-10570375 sense_intronic
CIL_0001NW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030302-ENSMUSG00000030307 CGP 10090 6:113745669-114249886
GeneTranscriptPositionBiotype
ENSMUSG00000030302 (Atp2b2)
ATPase, Ca++ transporting, plasma membrane 2 		ENSMUST00000089003 (Atp2b2-004) 113745669-113891539 protein_coding
ENSMUST00000101044 (Atp2b2-003) 113748294-113934681 protein_coding
ENSMUST00000101045 (Atp2b2-001) 113745675-114042026 protein_coding
ENSMUST00000135199 (Atp2b2-005) 113803338-113891370 retained_intron
ENSMUST00000144507 (Atp2b2-006) 113842331-113910582 processed_transcript
ENSMUST00000152831 (Atp2b2-002) 113745670-114042015 nonsense_mediated_decay
ENSMUST00000154738 (Atp2b2-007) 113842549-114042613 processed_transcript
ENSMUSG00000030307 (Slc6a11)
solute carrier family 6 (neurotransmitter transporter, GABA), member 11 		ENSMUST00000032451 (Slc6a11-201) 114131241-114249886 protein_coding
ENSMUSG00000087053 (Gm15082)
predicted gene 15082 		ENSMUST00000147045 (Gm15082-001) 113937739-113940206 lincRNA
ENSMUSG00000087083 (Gm15083)
predicted gene 15083 		ENSMUST00000138670 (Gm15083-001) 114004789-114052108 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NW_0001ENSG00000132164ENST00000254488ENST00000454147ENST00000464828ENSG00000157087ENST00000352432ENST00000360273ENST00000383800ENST00000397077ENST00000452124ENST00000460129ENST00000467702ENST00000468426ENST00000480680ENSG00000224771ENST00000419591ENSG00000226567ENST00000412578ENST00000436060ENSG00000236999ENST00000440152CIL_0001NW_0002ENSMUSG00000030302ENSMUST00000089003ENSMUST00000101044ENSMUST00000101045ENSMUST00000135199ENSMUST00000144507ENSMUST00000152831ENSMUST00000154738ENSMUSG00000030307ENSMUST00000032451ENSMUSG00000087053ENSMUST00000147045ENSMUSG00000087083ENSMUST00000138670
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NW_0001ENSG00000132164ENST00000254488ENST00000454147ENSG00000157087ENST00000352432ENST00000383800ENST00000397077ENST00000452124ENST00000467702ENST00000480680ENSG00000224771ENST00000419591ENSG00000226567ENST00000412578ENST00000436060ENSG00000236999ENST00000440152CIL_0001NW_0002ENSMUSG00000030302ENSMUST00000089003ENSMUST00000101044ENSMUST00000101045ENSMUST00000135199ENSMUST00000144507ENSMUST00000152831ENSMUST00000154738ENSMUSG00000030307ENSMUST00000032451ENSMUSG00000087053ENSMUST00000147045ENSMUSG00000087083ENSMUST00000138670
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132164 ENST00000254488 0.008±0.00 0.021±0.00 0.034±0.00 7.725±4.63 0.052±0.00 0.014±0.00 N/A 0.013±0.00 N/A N/A N/A 0.109±0.05 0.273±0.18 1.178±0.62
ENST00000454147 0.004±0.00 0.043±0.00 N/A 2.260±0.00 0.066±0.00 0.015±0.00 0.020±0.00 0.021±0.00 0.048±0.03 0.049±0.00 0.049±0.00 0.043±0.03 0.099±0.06 0.316±0.12
ENST00000464828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157087 ENST00000352432 0.039±0.00 0.058±0.00 N/A 8.287±0.00 0.175±0.00 0.041±0.00 0.008±0.01 0.991±0.91 1.023±0.99 0.004±0.00 N/A 0.069±0.05 0.094±0.00 0.312±0.00
ENST00000360273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000383800 N/A N/A N/A 13.845±0.54 N/A N/A N/A N/A N/A N/A 0.618±0.25 N/A N/A 0.095±0.00
ENST00000397077 N/A N/A N/A 5.248±1.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452124 N/A N/A N/A 6.105±0.00 0.077±0.04 N/A 0.013±0.00 N/A N/A N/A 0.899±0.00 0.109±0.00 0.017±0.00 0.160±0.00
ENST00000460129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A
ENST00000468426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480680 N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A 0.154±0.00 N/A N/A 0.027±0.00 0.042±0.00 N/A
ENSG00000224771 ENST00000419591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A 1.103±0.35
ENSG00000226567 ENST00000412578 N/A N/A N/A 0.027±0.02 N/A N/A 0.022±0.00 N/A N/A 0.012±0.00 N/A N/A N/A 0.423±0.36
ENST00000436060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.692±1.12
ENSG00000236999 ENST00000440152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.298±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030302 ENSMUST00000089003 0.643±0.11 0.705±0.17 N/A 12.306±10.16 0.034±0.00 0.128±0.01 0.108±0.00 0.123±0.03 0.384±0.20 N/A 0.033±0.00 N/A 0.044±0.05 N/A
ENSMUST00000101044 0.581±0.54 0.304±0.17 0.035±0.00 N/A 0.046±0.04 0.074±0.03 0.083±0.01 N/A 0.183±0.09 0.826±0.33 0.045±0.00 3.248±0.40 0.034±0.03 0.126±0.00
ENSMUST00000101045 0.885±0.85 0.109±0.00 0.060±0.00 14.558±0.00 0.062±0.00 0.090±0.00 0.101±0.06 0.329±0.07 N/A 0.172±0.03 0.017±0.01 1.234±0.61 N/A N/A
ENSMUST00000135199 N/A N/A N/A N/A N/A 0.105±0.02 N/A N/A 0.139±0.00 N/A 0.026±0.01 N/A N/A N/A
ENSMUST00000144507 N/A N/A N/A N/A 0.222±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152831 0.085±0.00 N/A N/A 1.516±0.00 N/A 0.162±0.05 0.115±0.02 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.02 N/A N/A N/A
ENSMUSG00000030307 ENSMUST00000032451 0.009±0.00 0.056±0.03 0.065±0.04 15.721±6.78 0.028±0.01 1.574±0.31 N/A 0.011±0.00 0.013±0.01 0.026±0.00 0.023±0.00 1.251±0.71 0.015±0.01 0.424±0.28
ENSMUSG00000087053 ENSMUST00000147045 0.117±0.03 N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A 0.024±0.00 N/A 0.080±0.06 N/A 0.040±0.02
ENSMUSG00000087083 ENSMUST00000138670 N/A N/A N/A 0.032±0.03 N/A N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 0.028±0.00

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