C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254488 SLC6A11-001 ENSG00000132164 9606 + 3:10816200-10940733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyOvaryPlacentaTestisENST00000254488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000254488 0.008±0.00 0.021±0.00 0.034±0.00 7.725±4.63 0.052±0.00 0.014±0.00 0.013±0.00 0.109±0.05 0.273±0.18 1.178±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NW CIL_0001NW_0001 CGP 3:10324023-10940733
CIL_0001LQ CIL_0001LQ_0001 CGP 3:10816200-11039247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004014 IEA adenosylmethionine decarboxylase activity
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007420 IEA brain development
GO:0008295 IEA spermidine biosynthetic process
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016020 IEA membrane
GO:0016021 TAS:IEA integral component of membrane
GO:0042165 IEA neurotransmitter binding
GO:0042493 IEA response to drug
GO:0042995 IEA cell projection
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032451 Slc6a11-201 protein_coding Mus_musculus 0 2252
ENSMUST00000114467 Slc6a8-201 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000168831 Slc6a8-003 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000146796 Slc6a8-011 retained_intron Mus_musculus 0.000000000000002 90
ENSMUST00000114465 Slc6a8-002 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000164449 Slc6a8-006 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000033752 Slc6a8-001 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000132085 Slc6a19-003 retained_intron Mus_musculus 0.0000000008 71
ENSMUST00000022048 Slc6a19-001 protein_coding Mus_musculus 0.0000000008 71
ENSMUST00000124406 Slc6a19-005 nonsense_mediated_decay Mus_musculus 0.0000005 62

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