C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001LQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132164-ENSG00000157103 CGP 9606 3:10816200-11039247
GeneTranscriptPositionBiotype
ENSG00000132164 (SLC6A11)
solute carrier family 6 (neurotransmitter transporter), member 11 		ENST00000254488 (SLC6A11-001) 10816200-10940733 protein_coding
ENST00000454147 (SLC6A11-002) 10816201-10825498 protein_coding
ENST00000464828 (SLC6A11-003) 10933966-10935397 retained_intron
ENSG00000157103 (SLC6A1)
solute carrier family 6 (neurotransmitter transporter), member 1 		ENST00000287766 (SLC6A1-001) 10992724-11039247 protein_coding
ENST00000425938 (SLC6A1-002) 10992728-11017327 protein_coding
ENST00000460480 (SLC6A1-004) 11017116-11022437 processed_transcript
ENST00000462473 (SLC6A1-003) 10992734-11017876 processed_transcript
ENST00000495636 (SLC6A1-005) 11033237-11037278 retained_intron
ENSG00000232287 (SLC6A1-AS1)
SLC6A1 antisense RNA 1 		ENST00000414969 (SLC6A1-AS1-001) 11006098-11019224 antisense
CIL_0001LQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030307-ENSMUSG00000030310 CGP 10090 6:114131241-114317522
GeneTranscriptPositionBiotype
ENSMUSG00000030307 (Slc6a11)
solute carrier family 6 (neurotransmitter transporter, GABA), member 11 		ENSMUST00000032451 (Slc6a11-201) 114131241-114249886 protein_coding
ENSMUSG00000030310 (Slc6a1)
solute carrier family 6 (neurotransmitter transporter, GABA), member 1 		ENSMUST00000032454 (Slc6a1-201) 114282635-114317522 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LQ_0001ENSG00000132164ENST00000254488ENST00000454147ENST00000464828ENSG00000157103ENST00000287766ENST00000425938ENST00000460480ENST00000462473ENST00000495636ENSG00000232287ENST00000414969CIL_0001LQ_0002ENSMUSG00000030307ENSMUST00000032451ENSMUSG00000030310ENSMUST00000032454
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LQ_0001ENSG00000132164ENST00000254488ENST00000454147ENSG00000157103ENST00000287766ENST00000460480ENSG00000232287ENST00000414969CIL_0001LQ_0002ENSMUSG00000030307ENSMUST00000032451ENSMUSG00000030310ENSMUST00000032454
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132164 ENST00000254488 0.008±0.00 0.021±0.00 0.034±0.00 7.725±4.63 0.052±0.00 0.014±0.00 N/A 0.013±0.00 N/A N/A N/A 0.109±0.05 0.273±0.18 1.178±0.62
ENST00000454147 0.004±0.00 0.043±0.00 N/A 2.260±0.00 0.066±0.00 0.015±0.00 0.020±0.00 0.021±0.00 0.048±0.03 0.049±0.00 0.049±0.00 0.043±0.03 0.099±0.06 0.316±0.12
ENST00000464828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157103 ENST00000287766 N/A N/A 0.093±0.00 9.310±0.00 0.296±0.09 0.012±0.00 N/A 11.050±10.69 1.929±1.83 0.132±0.00 N/A 0.267±0.00 0.195±0.04 N/A
ENST00000425938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460480 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A 1.477±0.00 N/A N/A
ENST00000462473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232287 ENST00000414969 N/A 0.031±0.00 N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A 0.315±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030307 ENSMUST00000032451 0.009±0.00 0.056±0.03 0.065±0.04 15.721±6.78 0.028±0.01 1.574±0.31 N/A 0.011±0.00 0.013±0.01 0.026±0.00 0.023±0.00 1.251±0.71 0.015±0.01 0.424±0.28
ENSMUSG00000030310 ENSMUST00000032454 0.017±0.01 0.010±0.00 0.016±0.01 55.636±15.09 0.179±0.06 0.136±0.02 0.019±0.01 0.013±0.00 0.037±0.05 0.075±0.01 0.054±0.04 0.029±0.01 0.136±0.15 0.083±0.04

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