C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyaluronan and proteoglycan link protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032827 Hapln3-201 ENSMUSG00000030606 10090 - 7:79117027-79131018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032827 1.375±0.53 1.097±0.25 0.288±0.00 1.439±1.25 0.874±0.38 0.748±0.27 0.406±0.15 1.159±0.15 0.107±0.12 0.626±0.52 0.142±0.13 0.884±0.42 5.915±1.64 0.400±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011L CIL_00011L_0002 CGP 7:79053483-79131018
CIL_00011I CIL_00011I_0002 CGP 7:79117027-79149060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359595 HAPLN3-001 protein_coding Homo_sapiens 0 878
ENST00000558770 HAPLN3-002 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000562281 HAPLN3-004 protein_coding Homo_sapiens 0 335
ENST00000562889 HAPLN3-003 protein_coding Homo_sapiens 0 878
ENST00000563808 HAPLN3-005 retained_intron Homo_sapiens 0 340

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