C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non-SMC element 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033006 Nsmce1-001 ENSMUSG00000030750 10090 - 7:125467640-125491596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033006 23.432±3.52 38.857±3.83 23.176±3.77 18.126±12.18 25.626±3.14 18.238±1.33 20.332±1.03 21.457±1.63 21.957±12.62 22.998±2.15 4.955±1.50 37.064±13.23 18.768±17.16 83.756±31.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V9 CIL_0003V9_0003 CGP 7:125444676-125491596
CIL_0008FH CIL_0008FH_0002 VISTA 7:125464047-126065353
CIL_0005KN CIL_0005KN_0002 CGP 7:125467640-125579472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030915 ISS Smc5-Smc6 complex
GO:0035556 IEA intracellular signal transduction
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding
GO:2001022 ISS positive regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361439 NSMCE1-001 protein_coding Homo_sapiens 0 872
ENST00000561960 NSMCE1-006 retained_intron Homo_sapiens 0 416
ENST00000563273 NSMCE1-014 protein_coding Homo_sapiens 0 671
ENST00000563900 NSMCE1-007 protein_coding Homo_sapiens 0 514
ENST00000564342 NSMCE1-012 protein_coding Homo_sapiens 0 542
ENST00000565070 NSMCE1-003 retained_intron Homo_sapiens 0 712
ENST00000566087 NSMCE1-009 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000569236 NSMCE1-002 nonsense_mediated_decay Homo_sapiens 0 745

Loading