C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033009 Prkrir-001 ENSMUSG00000030753 10090 + 7:98703103-98718062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033009 11.875±3.44 3.964±0.44 12.497±7.17 9.052±3.04 7.856±2.41 3.549±0.85 9.116±0.99 6.557±1.55 5.412±2.07 8.037±0.72 44.840±6.29 8.281±2.65 8.444±2.09 1.430±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000927 CIL_000927_0002 VISTA 7:98656508-99258633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260045 PRKRIR-001 protein_coding Homo_sapiens 0 2948
ENST00000398672 PRKRIRP1-001 processed_pseudogene Homo_sapiens 0 1101
ENST00000431978 PRKRIRP6-001 processed_pseudogene Homo_sapiens 0 898
ENST00000447914 PRKRIRP8-001 processed_pseudogene Homo_sapiens 0 1742
ENST00000456373 PRKRIRP3-001 processed_pseudogene Homo_sapiens 0 2272
ENST00000489193 PRKRIRP2-001 processed_pseudogene Homo_sapiens 0 2355
ENST00000503971 PRKRIRP9-001 processed_pseudogene Homo_sapiens 0 215
ENST00000520248 PRKRIRP7-001 processed_pseudogene Homo_sapiens 0 2608
ENST00000525277 PRKRIR-005 retained_intron Homo_sapiens 0 287
ENST00000528321 PRKRIRP4-001 processed_pseudogene Homo_sapiens 0 1600
ENST00000528993 PRKRIR-003 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000529901 PRKRIR-002 retained_intron Homo_sapiens 0 2329
ENST00000531878 PRKRIR-004 processed_transcript Homo_sapiens 0 254
ENST00000551685 RP11-73B8.2-001 processed_pseudogene Homo_sapiens 0 2178
ENST00000560646 CTD-2651B20.4-001 processed_pseudogene Homo_sapiens 0 484

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